Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LDX53_RS06390 Genome accession   NZ_CP084389
Coordinates   1337813..1339189 (-) Length   458 a.a.
NCBI ID   WP_046327455.1    Uniprot ID   A0AA47B3A5
Organism   Lactobacillus helsingborgensis strain IBH002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1332813..1344189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDX53_RS06370 (LDX53_06385) rlmB 1333477..1334232 (-) 756 WP_046327452.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LDX53_RS06375 (LDX53_06390) - 1334219..1334662 (-) 444 WP_046327453.1 Mini-ribonuclease 3 -
  LDX53_RS06380 (LDX53_06395) cysS 1334655..1336079 (-) 1425 WP_046327454.1 cysteine--tRNA ligase -
  LDX53_RS06385 (LDX53_06400) gltX 1336239..1337738 (-) 1500 WP_038523597.1 glutamate--tRNA ligase -
  LDX53_RS06390 (LDX53_06405) radA 1337813..1339189 (-) 1377 WP_046327455.1 DNA repair protein RadA Machinery gene
  LDX53_RS06395 (LDX53_06410) - 1339190..1339741 (-) 552 WP_046327456.1 dUTP diphosphatase -
  LDX53_RS06400 (LDX53_06415) - 1339855..1340169 (+) 315 WP_046327457.1 hypothetical protein -
  LDX53_RS06405 (LDX53_06420) pepC 1340299..1341645 (+) 1347 WP_046327458.1 aminopeptidase C -
  LDX53_RS06410 (LDX53_06425) galT 1341743..1343221 (-) 1479 WP_046327459.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49916.74 Da        Isoelectric Point: 7.6993

>NTDB_id=610919 LDX53_RS06390 WP_046327455.1 1337813..1339189(-) (radA) [Lactobacillus helsingborgensis strain IBH002]
MAKLKTKYKCRSCGYISASYLGRCPNCGAWNQFEKETEAVQNRSTKGSPSRLIKKTGISEPVKLGNVKAEKEERIKTSMA
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELADQYKVLYVSGEESANQIKLRADRLGLPANDMMLYPETDMEDI
RQQIADLEPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMVNKGLQEVTNPSAVFLDERLPKSTGSAIVVSLEGTRPILAEIQALVTPTA
FGYAKRTTSGIDYNRAGLLLAVLEKRGNLMLQNQDVYLTATGGIRLNEPAVDLAVVMAIASSYKNQEILPTDCFVGEVGL
TGEVRRVNQIDARIKEAAKTGFKRIFIPKHNMRASLKNAGIEVVPVASIPQALKVVLG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=610919 LDX53_RS06390 WP_046327455.1 1337813..1339189(-) (radA) [Lactobacillus helsingborgensis strain IBH002]
ATGGCAAAACTGAAAACAAAATATAAATGCCGTTCTTGTGGTTATATCTCTGCCAGCTATTTAGGACGCTGTCCTAATTG
TGGTGCTTGGAATCAGTTTGAAAAAGAAACTGAAGCAGTGCAAAACCGTTCAACTAAAGGCAGTCCCAGCAGGCTCATCA
AGAAAACCGGAATTAGCGAACCGGTTAAATTGGGGAATGTGAAGGCTGAAAAAGAAGAGCGCATCAAAACAAGTATGGCA
GAACTGAACAGGGTTTTAGGCGGCGGCATTGTTCCCGGTTCACTGGTTTTAATCGGTGGTGATCCTGGAATCGGTAAGTC
AACTTTAATGTTACAAATCATGAGCGAATTGGCTGATCAATATAAAGTACTGTATGTTTCAGGGGAAGAATCTGCTAATC
AAATCAAGCTCCGTGCAGATCGCTTAGGTCTTCCTGCTAATGACATGATGCTTTATCCGGAAACAGATATGGAAGATATC
CGTCAGCAAATTGCTGATTTAGAGCCCGATTTTGTCGTGATTGACTCCATTCAGACCATGAATGAACCCAGTCTTGACTC
GATGACCGGTTCGGCGTCACAAGTAAGGGAAGTCACAAGCGAATTGATGAAAATTGCTAAAATGGATGCGATTACCGTTT
TTGTTATTGGCCACGTGACAAAAGAAGGTGCGATTGCAGGTCCTAAAATTTTGGAGCACATGGTAGATACAGTCCTTTAT
TTTGAAGGTGATGAACATCATGCCTACCGTATTTTACATTCTGTTAAAAATCGGTTTGGTGCCGCAAATGAAATCGGCAT
GTTTGAAATGGTTAACAAAGGTTTGCAGGAAGTAACTAATCCTTCAGCCGTATTCTTAGATGAACGGTTGCCCAAATCTA
CCGGTTCCGCGATAGTAGTATCGCTTGAAGGAACAAGGCCAATTTTGGCGGAAATTCAGGCACTGGTGACACCGACTGCT
TTTGGTTATGCAAAAAGAACCACTTCGGGGATTGACTACAATAGAGCTGGACTATTGCTAGCTGTCTTGGAAAAAAGAGG
CAACTTAATGCTGCAAAATCAAGACGTTTATCTAACTGCCACTGGGGGAATTCGTTTGAACGAACCGGCAGTTGATTTGG
CAGTTGTCATGGCAATTGCATCAAGTTATAAAAATCAGGAAATTTTACCTACGGACTGTTTTGTGGGCGAAGTTGGCTTA
ACTGGTGAGGTGCGCAGAGTCAATCAAATAGATGCGCGTATTAAAGAAGCTGCTAAGACTGGTTTCAAACGTATTTTTAT
TCCGAAACACAATATGCGTGCTAGTCTTAAAAACGCGGGAATTGAAGTGGTTCCAGTTGCAAGTATCCCGCAAGCCTTAA
AAGTGGTTTTAGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

58.297

100

0.583
  radA Streptococcus pneumoniae Rx1

58.297

100

0.583
  radA Streptococcus pneumoniae D39

58.297

100

0.583
  radA Streptococcus pneumoniae R6

58.297

100

0.583
  radA Streptococcus pneumoniae TIGR4

58.297

100

0.583
  radA Streptococcus mitis SK321

58.297

100

0.583
  radA Bacillus subtilis subsp. subtilis str. 168

56.399

100

0.568