Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LDX52_RS07710 Genome accession   NZ_CP084384
Coordinates   1603607..1605412 (+) Length   601 a.a.
NCBI ID   WP_267271141.1    Uniprot ID   -
Organism   Lactobacillus helsingborgensis strain IBH003     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598607..1610412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDX52_RS07685 (LDX52_07675) - 1598965..1599441 (-) 477 WP_038524153.1 threonine/serine exporter family protein -
  LDX52_RS07690 (LDX52_07680) - 1599444..1600223 (-) 780 WP_046327609.1 threonine/serine exporter family protein -
  LDX52_RS07695 (LDX52_07685) - 1600233..1601780 (-) 1548 WP_267271140.1 ABC-F family ATP-binding cassette domain-containing protein -
  LDX52_RS07700 (LDX52_07690) - 1601887..1602246 (-) 360 WP_187159821.1 hypothetical protein -
  LDX52_RS07705 (LDX52_07695) - 1602276..1603457 (-) 1182 WP_109918778.1 LCP family protein -
  LDX52_RS07710 (LDX52_07700) pepF 1603607..1605412 (+) 1806 WP_267271141.1 oligoendopeptidase F Regulator
  LDX52_RS07715 (LDX52_07705) - 1605520..1606662 (-) 1143 WP_267271142.1 ArgE/DapE family deacylase -
  LDX52_RS07720 (LDX52_07710) - 1606676..1607425 (-) 750 WP_038524174.1 amino acid ABC transporter ATP-binding protein -
  LDX52_RS07725 (LDX52_07715) - 1607418..1608908 (-) 1491 WP_267271143.1 ABC transporter substrate-binding protein/permease -
  LDX52_RS07730 (LDX52_07720) - 1609070..1610299 (-) 1230 WP_046327617.1 lactate oxidase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68491.74 Da        Isoelectric Point: 4.9052

>NTDB_id=610906 LDX52_RS07710 WP_267271141.1 1603607..1605412(+) (pepF) [Lactobacillus helsingborgensis strain IBH003]
MTIPKRKDVPENLKWDLTRIFKSDEDWEDEYTRVKKEIPALSTIKDNFTTSGTSLYDGITQIFAVTRHLEKVYTYASLSS
DVDTKDAHYLGLVSQVQGLANQFDAATAFMAPAILSLSPEKLTAFKREEPRLADYNHLLDQITRMRPYTLSAQEEKLVAD
AGDAMSASENTYNVLTNSDMEFGYTQNDDGEMVQLSEGLYSLLIQSQNRTIRKEAFDTMYATYGQYQNSLAATLSGVVKK
HNYYARVHHYKSARDCAINENNVPAAVYDTLIAEVNKHIDLLHEYVALRKQILGLKDLQMWDIYVPLTGKPSLSYTFDAA
KAEAQKALQPLGADYLKQVDYIFNNRVIDVVESKNKVTGAYSGGCYDTDAYELLNWEDNIDSLYTLVHETGHSVHSMYTR
QNQPYVYGNYPIFVAEIASTTNENILTEYFLAHVKDPKTRAFVLNYYLDSFKGTLFRQAQFAEFEQKIHEMDAQGEPLTA
DRLNKCYGELNQRYYGDCVEPGGEIAKEWTRIPHFYYNFYVYQYATGFAAATALANNVVHGTEEQTKAYINFLKSGSSDY
PVEIMKKAGVDMTQPEYLEEAFATFAKRLAEFKEIVQNNFS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=610906 LDX52_RS07710 WP_267271141.1 1603607..1605412(+) (pepF) [Lactobacillus helsingborgensis strain IBH003]
ATGACAATTCCTAAAAGAAAAGACGTCCCTGAAAATCTTAAATGGGACTTAACTAGAATATTCAAATCCGATGAAGACTG
GGAAGATGAATATACACGTGTTAAAAAAGAAATACCAGCTTTAAGCACTATCAAAGATAATTTTACTACTTCGGGAACCT
CTTTATATGACGGGATTACGCAAATATTTGCAGTTACTCGCCACTTGGAAAAAGTTTATACTTATGCCAGTTTGTCCAGT
GATGTCGATACCAAAGATGCCCACTATTTAGGTTTAGTTTCTCAAGTACAAGGACTAGCCAATCAATTTGATGCCGCTAC
CGCTTTTATGGCTCCCGCAATTTTAAGCCTTTCTCCTGAAAAATTAACCGCCTTTAAACGCGAAGAACCAAGACTAGCTG
ATTACAATCATTTATTGGATCAGATTACCAGAATGCGACCATATACTTTATCTGCTCAAGAAGAAAAATTAGTTGCCGAT
GCTGGAGATGCAATGTCTGCTTCTGAAAACACCTATAATGTGCTGACTAATTCGGATATGGAATTTGGTTACACGCAAAA
TGATGACGGCGAAATGGTGCAATTATCGGAAGGATTATATTCCTTACTAATCCAATCGCAAAACAGAACTATCCGCAAGG
AAGCTTTTGACACCATGTATGCCACATACGGTCAATACCAAAACTCATTGGCGGCCACTCTTTCTGGAGTAGTCAAAAAG
CATAACTATTATGCGCGCGTTCATCATTATAAATCAGCCCGCGATTGCGCGATTAACGAAAACAATGTACCGGCAGCTGT
TTACGATACTTTAATTGCAGAGGTAAACAAGCATATAGACTTACTACATGAATATGTGGCTCTGCGTAAACAAATTTTAG
GTTTAAAAGACCTGCAAATGTGGGACATCTATGTGCCCCTGACAGGCAAACCGTCTTTAAGCTATACATTTGACGCAGCC
AAAGCGGAAGCGCAAAAGGCTTTGCAACCACTTGGAGCAGACTATTTAAAACAGGTAGACTATATTTTCAATAATCGGGT
AATTGATGTCGTTGAATCAAAAAATAAAGTTACAGGGGCTTATTCTGGTGGCTGCTATGATACGGACGCTTATGAACTCC
TTAACTGGGAGGATAATATTGATTCTCTGTATACTTTAGTACACGAAACGGGACATTCAGTTCACAGTATGTATACGAGA
CAAAATCAGCCTTACGTTTATGGTAATTATCCTATATTTGTTGCCGAAATTGCCTCAACTACTAACGAAAACATCCTGAC
CGAATACTTTTTAGCCCATGTAAAAGATCCTAAAACACGTGCATTTGTTCTTAATTACTACTTAGATTCATTTAAAGGGA
CTTTATTCAGACAAGCTCAATTCGCCGAATTTGAACAAAAAATTCACGAAATGGATGCTCAGGGTGAGCCTTTAACTGCT
GACCGGCTAAATAAATGCTATGGTGAACTTAACCAGCGCTACTATGGCGATTGCGTTGAACCGGGCGGAGAAATTGCCAA
AGAGTGGACCAGAATCCCGCACTTTTACTACAATTTCTATGTCTATCAGTACGCTACAGGTTTTGCTGCAGCTACAGCTT
TGGCTAATAACGTTGTTCATGGCACCGAAGAACAAACGAAAGCTTACATTAACTTTTTAAAATCTGGTTCAAGTGACTAT
CCGGTTGAAATTATGAAAAAAGCAGGCGTTGACATGACTCAACCTGAATATTTGGAAGAAGCATTTGCCACTTTTGCCAA
ACGCTTAGCTGAATTTAAGGAAATTGTTCAAAATAATTTCAGTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.155

98.502

0.484