Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LDX52_RS06730 Genome accession   NZ_CP084384
Coordinates   1392821..1394197 (-) Length   458 a.a.
NCBI ID   WP_267271042.1    Uniprot ID   -
Organism   Lactobacillus helsingborgensis strain IBH003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1387821..1399197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDX52_RS06705 (LDX52_06695) - 1388399..1388842 (-) 444 WP_109918643.1 Mini-ribonuclease 3 -
  LDX52_RS06710 (LDX52_06700) - 1388910..1389260 (-) 351 WP_267271039.1 type II toxin-antitoxin system YafQ family toxin -
  LDX52_RS06715 (LDX52_06705) - 1389260..1389553 (-) 294 WP_267271040.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  LDX52_RS06720 (LDX52_06710) cysS 1389657..1391081 (-) 1425 WP_267271041.1 cysteine--tRNA ligase -
  LDX52_RS06725 (LDX52_06715) gltX 1391247..1392746 (-) 1500 WP_038523597.1 glutamate--tRNA ligase -
  LDX52_RS06730 (LDX52_06720) radA 1392821..1394197 (-) 1377 WP_267271042.1 DNA repair protein RadA Machinery gene
  LDX52_RS06735 (LDX52_06725) - 1394198..1394749 (-) 552 WP_046327456.1 dUTP diphosphatase -
  LDX52_RS06740 (LDX52_06730) - 1394864..1395178 (+) 315 WP_109918647.1 hypothetical protein -
  LDX52_RS06745 (LDX52_06735) pepC 1395308..1396654 (+) 1347 WP_038523607.1 aminopeptidase C -
  LDX52_RS06750 (LDX52_06740) galT 1396751..1398229 (-) 1479 WP_267271043.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49930.76 Da        Isoelectric Point: 7.6993

>NTDB_id=610903 LDX52_RS06730 WP_267271042.1 1392821..1394197(-) (radA) [Lactobacillus helsingborgensis strain IBH003]
MAKLKTKYKCRSCGYISASYLGRCPNCGAWNQFEKETEAVQNRSTKGSPSRLIKKTGISEPVKLGNVKAEKEERIKTSMA
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELADQYKVLYVSGEESANQIKLRADRLGLPANDMMLYPETDMEDI
RQQIADLEPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMVNKGLQEVTNPSAVFLDERLPKSTGSAIVVSLEGTRPILAEIQALVTPTA
FGYAKRTTSGIDYNRAGLLLAVLEKRGNLMLQNQDVYLTATGGIRLNEPAVDLAVVMAIASSYKNQEILPTDCFVGEVGL
TGEVRRVNQIDARIKEAAKTGFKRIFIPKHNMRASLKNAGIEVIPVASIPQALKVVLG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=610903 LDX52_RS06730 WP_267271042.1 1392821..1394197(-) (radA) [Lactobacillus helsingborgensis strain IBH003]
ATGGCAAAACTGAAAACAAAATATAAATGCCGTTCTTGTGGTTATATCTCTGCCAGCTATTTAGGACGCTGTCCTAATTG
TGGTGCTTGGAATCAGTTTGAAAAAGAAACTGAAGCAGTGCAAAACCGTTCAACTAAAGGCAGTCCCAGCAGGCTCATCA
AGAAAACCGGAATTAGCGAACCGGTTAAATTGGGGAATGTGAAGGCTGAAAAAGAAGAGCGCATCAAAACAAGTATGGCG
GAACTGAACAGGGTTTTAGGCGGCGGTATTGTTCCCGGTTCACTGGTTTTAATCGGTGGTGACCCTGGAATCGGTAAGTC
AACTTTAATGTTACAAATCATGAGCGAATTGGCTGATCAATATAAAGTGCTGTATGTTTCAGGGGAAGAATCTGCTAATC
AAATCAAGCTCCGTGCAGATCGCTTAGGTCTTCCTGCTAATGACATGATGCTTTATCCAGAAACAGATATGGAAGATATT
CGTCAGCAAATTGCTGATTTAGAGCCCGATTTTGTCGTGATTGACTCCATTCAGACCATGAATGAACCCAGTCTTGACTC
GATGACCGGTTCGGCGTCACAAGTGAGGGAAGTCACAAGCGAATTGATGAAAATCGCTAAAATGGATGCGATTACCGTTT
TTGTTATTGGACACGTGACAAAAGAAGGAGCAATTGCAGGACCTAAAATTCTGGAACACATGGTAGATACAGTCCTTTAT
TTTGAGGGTGATGAACATCATGCCTACCGTATTTTACATTCTGTTAAAAATCGGTTTGGTGCTGCAAATGAAATCGGCAT
GTTTGAAATGGTTAACAAAGGTTTGCAGGAAGTAACTAATCCTTCAGCCGTATTCTTAGATGAACGGTTGCCCAAATCTA
CCGGTTCCGCGATAGTAGTATCGCTTGAAGGAACAAGGCCAATTTTGGCGGAAATTCAGGCACTGGTGACACCGACTGCT
TTTGGTTATGCAAAAAGAACCACTTCTGGGATTGACTACAATAGAGCTGGACTATTGCTAGCTGTCTTGGAAAAAAGAGG
CAACTTGATGTTGCAAAATCAAGACGTTTATCTAACTGCCACTGGGGGAATTCGTTTGAACGAACCGGCAGTTGATTTGG
CAGTTGTCATGGCAATTGCATCAAGTTATAAAAATCAGGAAATTTTACCTACGGACTGTTTTGTGGGCGAAGTCGGCTTA
ACTGGTGAGGTGCGCAGAGTCAATCAAATAGATGCGCGTATTAAAGAAGCTGCTAAGACTGGTTTCAAACGTATTTTTAT
TCCGAAACACAATATGCGTGCTAGTCTTAAAAACGCGGGAATTGAAGTGATTCCAGTTGCAAGTATCCCGCAAGCCCTAA
AAGTGGTTTTAGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

58.515

100

0.585
  radA Streptococcus pneumoniae Rx1

58.515

100

0.585
  radA Streptococcus pneumoniae D39

58.515

100

0.585
  radA Streptococcus pneumoniae R6

58.515

100

0.585
  radA Streptococcus pneumoniae TIGR4

58.515

100

0.585
  radA Streptococcus mitis SK321

58.515

100

0.585
  radA Bacillus subtilis subsp. subtilis str. 168

56.616

100

0.57