Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BASU_RS04515 Genome accession   NC_022081
Coordinates   835065..835856 (+) Length   263 a.a.
NCBI ID   WP_015239427.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5113     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 830065..840856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BASU_RS04495 (BASU_0804) - 832060..832944 (+) 885 WP_007408548.1 PhzF family phenazine biosynthesis isomerase -
  BASU_RS04500 (BASU_0805) - 833021..833605 (+) 585 WP_007408549.1 nitroreductase -
  BASU_RS04505 (BASU_0806) - 833644..833835 (-) 192 WP_003155508.1 YfhD family protein -
  BASU_RS19620 (BASU_0807) - 833906..834016 (-) 111 WP_003155504.1 YfhE family protein -
  BASU_RS04510 (BASU_0808) - 834074..834973 (-) 900 WP_020955524.1 TIGR01777 family oxidoreductase -
  BASU_RS04515 (BASU_0809) recX 835065..835856 (+) 792 WP_015239427.1 recombination regulator RecX Regulator
  BASU_RS04520 (BASU_0810) - 835863..836177 (+) 315 WP_007408553.1 YfhH family protein -
  BASU_RS04525 (BASU_0811) - 836322..837515 (+) 1194 WP_076982912.1 MFS transporter -
  BASU_RS04530 (BASU_0812) - 837555..837944 (-) 390 WP_020955526.1 DUF2606 family protein -
  BASU_RS04535 (BASU_0813) - 837907..838818 (-) 912 WP_020955527.1 trypsin-like serine protease -
  BASU_RS04540 - 838963..839115 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  BASU_RS04545 (BASU_0814) - 839239..839508 (+) 270 WP_003155492.1 YfhJ family protein -
  BASU_RS04550 (BASU_0815) - 839640..840167 (+) 528 WP_007408557.1 SH3 domain-containing protein -
  BASU_RS04555 (BASU_0816) - 840253..840588 (+) 336 WP_020955528.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30935.10 Da        Isoelectric Point: 5.8035

>NTDB_id=61088 BASU_RS04515 WP_015239427.1 835065..835856(+) (recX) [Bacillus velezensis UCMB5113]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=61088 BASU_RS04515 WP_015239427.1 835065..835856(+) (recX) [Bacillus velezensis UCMB5113]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment