Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LA387_RS08515 Genome accession   NZ_CP084377
Coordinates   1662430..1663473 (+) Length   347 a.a.
NCBI ID   WP_003133153.1    Uniprot ID   A0AA46TVQ7
Organism   Lactococcus garvieae strain Lg-Granada     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1657430..1668473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA387_RS08500 - 1659974..1661320 (+) 1347 WP_003133148.1 glucose-6-phosphate isomerase -
  LA387_RS08505 rsmD 1661415..1661953 (+) 539 Protein_1663 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LA387_RS08510 coaD 1661943..1662440 (+) 498 WP_003133151.1 pantetheine-phosphate adenylyltransferase -
  LA387_RS08515 sepM 1662430..1663473 (+) 1044 WP_003133153.1 SepM family pheromone-processing serine protease Regulator
  LA387_RS08520 adhE 1663503..1666196 (-) 2694 WP_003133155.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  LA387_RS08525 - 1666351..1667391 (-) 1041 WP_003133156.1 lactonase family protein -
  LA387_RS08530 rpsB 1667664..1668437 (+) 774 WP_195212943.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37816.10 Da        Isoelectric Point: 6.9825

>NTDB_id=610869 LA387_RS08515 WP_003133153.1 1662430..1663473(+) (sepM) [Lactococcus garvieae strain Lg-Granada]
MKNEKIKKHKKLKLFFGIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATILSSEEMTGGMTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTEMIDYVSQQKVGDEVTIKYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNSGAKIFLCPDETEEQAKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=610869 LA387_RS08515 WP_003133153.1 1662430..1663473(+) (sepM) [Lactococcus garvieae strain Lg-Granada]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGGTATCGCGTTACCGCTTCTTATTGTAGTGGG
TTTGTTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAATCAGATGGTAGATGTTGCGGGAA
AGAAAGATGAACATAAAGGCAATTTTTATTTAACGACTGTTGAAATGGTACGGGCCAATGCCGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTATTTTGAGTAGTGAAGAGATGACGGGTGGGATGACCAATCAGCAATTTGACTTGGTCAA
CCAGTTCTATATGCAGACCGCGCAAAATACAGCTGTTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGGGTCTACGTTTTGAGTATTACTGAGGATTCGACATTTAAAAATGACTTGCAACTTTCGGATACGATAACGGCA
GTTAATGGGCACACTTTCAAATCTTCAACTGAGATGATTGACTATGTGTCTCAACAAAAAGTTGGAGATGAGGTGACCAT
CAAGTACACACGGGTGGATGGCAGCAACCATGAAGCCACAGGCAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GCATTGGTTTAGTAGATCATACACAGGTTGTGACAGACCCTAAAGTTAAAATCGATGCCGGAAGTATTGGCGGACCAAGT
GCTGGGATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAAGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGCAATTCGGGTG
CAAAAATTTTCCTTTGCCCGGATGAAACGGAAGAACAGGCAAAGGCTTCTGGTACAACAAATAACTACACAGATGCGCTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATCGTACCTGTAAAGACGATCCAAGATGCACTAGACTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)

PDZ domain (PDZ_2)

(134-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

49.568

100

0.496