Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BASU_RS02110 Genome accession   NC_022081
Coordinates   337635..338072 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5113     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 332635..343072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BASU_RS02085 (BASU_0314) - 333655..334791 (+) 1137 WP_020955302.1 alcohol dehydrogenase catalytic domain-containing protein -
  BASU_RS02090 (BASU_0315) - 334806..335240 (+) 435 WP_020955303.1 RDD family protein -
  BASU_RS02095 (BASU_0316) - 335312..335635 (+) 324 WP_015239126.1 YckD family protein -
  BASU_RS02100 (BASU_0317) - 335739..337175 (+) 1437 WP_007409356.1 family 1 glycosylhydrolase -
  BASU_RS02105 (BASU_0318) nin/comJ 337216..337614 (-) 399 WP_020955304.1 competence protein ComJ Regulator
  BASU_RS02110 (BASU_0319) nucA/comI 337635..338072 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BASU_RS02115 (BASU_0320) hxlB 338429..338986 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  BASU_RS02120 (BASU_0321) hxlA 338983..339618 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  BASU_RS02125 (BASU_0322) - 339850..340212 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=61083 BASU_RS02110 WP_003156588.1 337635..338072(-) (nucA/comI) [Bacillus velezensis UCMB5113]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=61083 BASU_RS02110 WP_003156588.1 337635..338072(-) (nucA/comI) [Bacillus velezensis UCMB5113]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment