Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GL980_RS09235 Genome accession   NZ_CP101522
Coordinates   1913821..1915248 (-) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli O157:H7 strain MD2019EC2705C4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1908821..1920248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL980_RS09205 (GL980_09170) yeeZ 1908876..1909700 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  GL980_RS09210 (GL980_09175) yeeY 1909746..1910675 (+) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  GL980_RS09215 (GL980_09180) yoeI 1910890..1910952 (+) 63 WP_010723108.1 membrane protein YoeI -
  GL980_RS09220 (GL980_09185) plaP 1910942..1912300 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GL980_RS09225 (GL980_09190) tsuA 1912479..1913537 (+) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  GL980_RS09230 (GL980_09195) tsuB 1913551..1913778 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GL980_RS09235 (GL980_09200) sbcB 1913821..1915248 (-) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  GL980_RS09240 (GL980_09205) dacD 1915457..1916623 (+) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GL980_RS09245 (GL980_09210) sbmC 1916742..1917215 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  GL980_RS09250 (GL980_09215) yeeA 1917414..1918472 (+) 1059 WP_001202488.1 FUSC family protein -
  GL980_RS09255 (GL980_09220) tmaR 1918644..1918973 (+) 330 WP_000450409.1 DUF496 family protein -
  GL980_RS09260 (GL980_09225) - 1919074..1919256 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  GL980_RS09265 (GL980_09230) - 1919319..1919456 (+) 138 Protein_1811 transposase domain-containing protein -
  GL980_RS09270 (GL980_09235) - 1919745..1919837 (-) 93 Protein_1812 hypothetical protein -
  GL980_RS09275 (GL980_09240) yeeW 1919871..1920065 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=610700 GL980_RS09235 WP_000980540.1 1913821..1915248(-) (sbcB) [Escherichia coli O157:H7 strain MD2019EC2705C4]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=610700 GL980_RS09235 WP_000980540.1 1913821..1915248(-) (sbcB) [Escherichia coli O157:H7 strain MD2019EC2705C4]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581