Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EL271_RS00210 Genome accession   NZ_AP018937
Coordinates   36643..37413 (+) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HU-OH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31643..42413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL271_RS00195 (SPOH_0033) - 33428..33865 (+) 438 WP_000076479.1 CoA-binding protein -
  EL271_RS11565 (SPOH_0034) - 33906..34289 (+) 384 WP_000693132.1 hypothetical protein -
  EL271_RS00200 (SPOH_0035) - 34318..35328 (-) 1011 WP_000009171.1 YeiH family protein -
  EL271_RS00205 (SPOH_0036) - 35477..36646 (+) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  EL271_RS00210 (SPOH_0037) recO 36643..37413 (+) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  EL271_RS00215 (SPOH_0038) plsX 37410..38402 (+) 993 WP_000717459.1 phosphate acyltransferase PlsX -
  EL271_RS00220 (SPOH_0039) - 38408..38641 (+) 234 WP_000659556.1 acyl carrier protein -
  EL271_RS00225 - 38678..38978 (+) 301 Protein_35 transposase family protein -
  EL271_RS00230 blpU 39181..39411 (+) 231 Protein_36 bacteriocin-like peptide BlpU -
  EL271_RS11885 - 39414..39539 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  EL271_RS00235 (SPOH_0040) comA 40126..42279 (+) 2154 WP_000668304.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=61064 EL271_RS00210 WP_000616162.1 36643..37413(+) (recO) [Streptococcus pneumoniae strain HU-OH]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=61064 EL271_RS00210 WP_000616162.1 36643..37413(+) (recO) [Streptococcus pneumoniae strain HU-OH]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996

Multiple sequence alignment