Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LDO52_RS13130 Genome accession   NZ_CP084300
Coordinates   2729652..2729978 (-) Length   108 a.a.
NCBI ID   WP_167381258.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2724652..2734978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS13110 (LDO52_13110) - 2724851..2725510 (-) 660 WP_005095259.1 FHA domain-containing protein -
  LDO52_RS13115 (LDO52_13115) gspD 2725573..2727825 (-) 2253 WP_005173053.1 type II secretion system secretin GspD -
  LDO52_RS13120 (LDO52_13120) - 2727864..2728727 (-) 864 WP_074383927.1 type II secretion system protein N -
  LDO52_RS13125 (LDO52_13125) gspN 2728727..2729470 (-) 744 WP_225553271.1 type II secretion system protein N -
  LDO52_RS13130 (LDO52_13130) hns 2729652..2729978 (-) 327 WP_167381258.1 H-NS family nucleoid-associated regulatory protein Regulator
  LDO52_RS13135 (LDO52_13135) - 2730121..2730549 (-) 429 WP_225553272.1 acyl-CoA thioesterase -
  LDO52_RS13140 (LDO52_13140) - 2730558..2731751 (-) 1194 WP_180074967.1 heme biosynthesis protein HemY -
  LDO52_RS13145 (LDO52_13145) - 2731758..2732594 (-) 837 WP_225553274.1 hypothetical protein -
  LDO52_RS13150 (LDO52_13150) - 2732591..2733370 (-) 780 WP_180071877.1 uroporphyrinogen-III synthase -
  LDO52_RS13155 (LDO52_13155) hemC 2733370..2734293 (-) 924 WP_005095241.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12304.04 Da        Isoelectric Point: 7.0191

>NTDB_id=610530 LDO52_RS13130 WP_167381258.1 2729652..2729978(-) (hns) [Acinetobacter pseudolwoffii strain XMC5X702]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVADKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELDKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=610530 LDO52_RS13130 WP_167381258.1 2729652..2729978(-) (hns) [Acinetobacter pseudolwoffii strain XMC5X702]
ATTATGCCAGATATTACTCATTTATCAGTAGAAGAGTTAAAGCGTTTACAAGCCGAAGCAGAATCACTGATTGCTTCAAA
AAAAGACCAAGAGATCGAAGATGCTTATCAGCAAATCTTGGCCGTTGCTGACAAAGTAGGTATGACGGTTGAACAGTTAC
TTGAATTTGGCGCGTCTAAACGCAAGAAATCATCACGTAAATCAGTAGAGCCACGTTATCGTAGTAAAAGCAACCCAGAT
GATACCTGGACGGGTCGTGGCAAGCAGCCGCGCTGGTTGGTGGCAGAGCTGGACAAAGGTGCCAAGCTTGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

77.778

100

0.778