Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LDO52_RS12840 Genome accession   NZ_CP084300
Coordinates   2659990..2662212 (+) Length   740 a.a.
NCBI ID   WP_225553249.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2654990..2667212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS12820 (LDO52_12820) lnt 2655787..2657346 (+) 1560 WP_225553246.1 apolipoprotein N-acyltransferase -
  LDO52_RS12825 (LDO52_12825) - 2657500..2657835 (-) 336 WP_225553247.1 hypothetical protein -
  LDO52_RS12830 (LDO52_12830) gspG 2658120..2658554 (-) 435 WP_005095357.1 type II secretion system major pseudopilin GspG -
  LDO52_RS12835 (LDO52_12835) gspF 2658634..2659839 (-) 1206 WP_074383949.1 type II secretion system inner membrane protein GspF -
  LDO52_RS12840 (LDO52_12840) priA 2659990..2662212 (+) 2223 WP_225553249.1 primosomal protein N' Machinery gene
  LDO52_RS12845 (LDO52_12845) - 2662288..2664141 (+) 1854 WP_180086554.1 cation:proton antiporter -
  LDO52_RS12850 (LDO52_12850) - 2664192..2665067 (+) 876 WP_005095347.1 Hsp33 family molecular chaperone HslO -
  LDO52_RS12855 (LDO52_12855) - 2665391..2665852 (+) 462 WP_005095344.1 DUF2147 domain-containing protein -
  LDO52_RS12860 (LDO52_12860) - 2666312..2666644 (+) 333 WP_005095341.1 chaperone modulator CbpM -
  LDO52_RS12865 (LDO52_12865) - 2666733..2666996 (+) 264 WP_005095339.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84158.13 Da        Isoelectric Point: 8.5091

>NTDB_id=610529 LDO52_RS12840 WP_225553249.1 2659990..2662212(+) (priA) [Acinetobacter pseudolwoffii strain XMC5X702]
MQNSHTDSSPLCRVRVAVPVHVFDCFDYSMNTEQFEQAQVGARVLVSFGRQNLVGVIIEKLSADTPVDPRFKLKPVTELL
DERAIIDPKVLSLLTWSAQYYQFPMGEVVHSALPTLLRQGKPYNLLARTWKLLNPDAEAKIRRSEKQQEAYRILKLHPVG
TTENVLNLAGIETATLKALEKKEICTCVLEPQDFSPQPMQLAQMPLTANPEQKHAIDQVLKYRNQYQAFLLDGLTGSGKT
EVYLQIMQQVLKQGKQVLVLVPEIGLTPQTISRFQSRFQCHIALLHSGLNDTKRLQAWQAAETGKASIILGTRSAIYTPI
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDSYALVEHGKMQVLELNQRAGTALMPKIHI
LDLKVAQKKHGISLQLIQDIKKRLEKKEQVLIFLNRRGYAPVLLCGSCGWQAQCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHQELVTLGMGTGKVEEHLNELFPDHEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVNENYRVFAQQTLKERQIAQM
PPYRYAILIRCESKDQAQNTEFLQKHAAFLRQYPDLALDIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRSWWQNM
LQDKPSSMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=610529 LDO52_RS12840 WP_225553249.1 2659990..2662212(+) (priA) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGCAAAATTCTCATACCGATTCTAGTCCACTTTGTCGCGTACGCGTTGCTGTACCTGTGCATGTATTCGATTGTTTTGA
TTACAGTATGAATACAGAACAATTTGAGCAGGCCCAGGTCGGCGCACGCGTATTGGTATCTTTTGGACGACAGAATCTGG
TTGGGGTGATTATCGAAAAGCTCTCCGCAGATACTCCGGTCGACCCACGTTTTAAACTCAAGCCCGTCACTGAATTGCTG
GATGAACGTGCCATCATAGACCCTAAAGTTTTAAGTTTGTTGACATGGTCGGCACAGTATTATCAGTTTCCGATGGGTGA
AGTGGTGCACAGTGCCCTGCCAACGCTGTTACGCCAAGGTAAGCCTTATAACCTGCTGGCCCGCACCTGGAAACTTCTGA
ACCCTGATGCTGAAGCTAAAATACGCCGTTCAGAAAAGCAGCAGGAAGCCTACCGGATTTTAAAACTGCATCCGGTTGGC
ACCACTGAAAATGTATTGAATTTGGCCGGAATTGAAACTGCGACCTTAAAAGCACTGGAGAAAAAAGAGATTTGTACCTG
TGTGCTGGAGCCACAAGATTTCAGTCCACAGCCGATGCAATTGGCGCAAATGCCGCTAACCGCTAATCCTGAACAGAAAC
ATGCCATTGATCAGGTATTAAAGTATCGCAATCAATATCAGGCTTTTTTACTGGATGGTCTGACCGGCAGTGGTAAAACC
GAAGTCTATCTACAAATCATGCAACAGGTGCTGAAACAGGGTAAGCAGGTTTTGGTGCTGGTGCCGGAAATTGGTCTGAC
CCCGCAAACGATTAGCCGTTTCCAGTCGCGTTTTCAGTGTCATATCGCGCTATTGCATTCAGGCCTAAACGATACAAAAC
GTCTGCAAGCCTGGCAGGCAGCAGAGACTGGCAAAGCTTCAATCATCCTCGGCACACGTTCCGCCATCTATACCCCCATA
CCGAATTTGGGTCTGATCATTCTGGATGAAGAACATGATTTGTCTTTTAAGCAGCAGGAAGGTTTCCGCTATCATGCCCG
CGATGTGGCGCTGTACCGCGGCCATTTACAGCAATGTCCAGTGCTGCTGGGATCAGCGACACCAAGTATCGACAGTTATG
CGCTGGTTGAACATGGCAAAATGCAGGTGCTGGAGCTGAATCAACGTGCCGGCACAGCCTTAATGCCGAAAATCCATATT
CTGGATTTAAAGGTGGCACAGAAAAAGCATGGCATCAGTCTGCAACTGATTCAGGACATCAAAAAGCGTCTGGAGAAAAA
AGAACAGGTACTGATCTTTTTAAACCGCCGTGGCTATGCCCCCGTCCTGCTTTGTGGCAGTTGTGGCTGGCAGGCACAAT
GTCCGCACTGCGATGCCAATTTTACTGTGCATCGCCAGCCTTATCAGCATCTGCATTGCCATCACTGTGGCACCATTCAC
CGAATGCCGGAGCACTGTCCGCAGTGTCAGCATCAGGAACTGGTCACACTGGGTATGGGCACTGGCAAGGTCGAAGAACA
TCTGAATGAACTTTTTCCAGATCATGAAGTGATTCGGGTCGATCGCGATTCCACCAGCCGGGTGGGTAGCTGGCAAAAAA
TCTATGACAAGATTCAAAAAAGTGAACCCGCGATTCTGCTCGGCACCCAGATGCTGGCCAAAGGGCATCATTTTCCTTAT
GTGACGCTGGTGGCGATTCTGGATATTGATTCCGGTCTGCTCAGTGTGGATTTCCGTGCCACCGAACGTACCGCACAACT
GATCGTTCAGGTCGCAGGCCGGGCTGGACGTGGTGAACACAAAGGCGATGTCTATTTGCAGACGCTCAGACCGGATCATG
CCCTGCTGAATACCTTGGTCAATGAAAATTATCGTGTGTTTGCCCAGCAGACCTTAAAGGAACGGCAAATTGCCCAGATG
CCGCCTTATCGTTATGCCATCCTGATTCGCTGCGAATCCAAGGATCAGGCACAAAACACCGAATTCTTACAGAAACATGC
GGCATTCCTCAGGCAATATCCTGATCTGGCGCTGGACATCTGGGGGCCAATTCCTGCGCCGATGGAACGTAAGGCTGGGC
GCTATCAGTCGCATATGGTGCTCTTGTCAGCAGATCGTCCACGTTTGCATTACTATGTGCGCAGCTGGTGGCAGAATATG
CTGCAGGACAAACCTTCCAGCATGAAGCTGACACTGGACATTGACCCGCAAGAACTCAGCTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.253

99.189

0.707