Detailed information NTG0610510

Bioinformatically predicted

Overview

• Name: tonB2
• Type: Machinery gene
• Locus tag: LDO52_RS02260
• Genome accession: NZ_CP084300
• Coordinates: 458535..459392 (+)
• Length: 285 a.a.
• NCBI ID: WP_225554186.1
• Uniprot ID: -
• Organism: Acinetobacter pseudolwoffii strain XMC5X702
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	453719..466741	458535..459392	within	0

Gene organization within MGE regions

Location: 453719..466741

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO52_RS02230 (LDO52_02230)	-	453719..454024 (+)	306	WP_087547287.1	IS630 transposase-related protein	-
LDO52_RS02235 (LDO52_02235)	-	454072..454557 (+)	486	WP_225554184.1	transposase	-
LDO52_RS02240 (LDO52_02240)	-	454693..455625 (+)	933	WP_005103080.1	IS5 family transposase	-
LDO52_RS02245 (LDO52_02245)	-	456049..456624 (-)	576	WP_005094083.1	xanthine phosphoribosyltransferase	-
LDO52_RS02250 (LDO52_02250)	-	456713..457396 (-)	684	WP_410553233.1	DUF3108 domain-containing protein	-
LDO52_RS02255 (LDO52_02255)	-	457587..458273 (-)	687	WP_225553654.1	hypothetical protein	-
LDO52_RS02260 (LDO52_02260)	tonB2	458535..459392 (+)	858	WP_225554186.1	energy transducer TonB	Machinery gene
LDO52_RS02265 (LDO52_02265)	ybeY	459571..460053 (-)	483	WP_100329342.1	rRNA maturation RNase YbeY	-
LDO52_RS02270 (LDO52_02270)	-	460076..461152 (-)	1077	WP_005094064.1	PhoH family protein	-
LDO52_RS02275 (LDO52_02275)	miaB	461191..462648 (-)	1458	WP_005094063.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-
LDO52_RS02280 (LDO52_02280)	-	462983..464917 (+)	1935	WP_171294234.1	lytic transglycosylase domain-containing protein	-
LDO52_RS02285 (LDO52_02285)	-	464949..465587 (+)	639	WP_074383563.1	ribonuclease I	-
LDO52_RS02290 (LDO52_02290)	-	465755..466741 (+)	987	WP_225553656.1	malate dehydrogenase	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 32658.07 Da
• Isoelectric Point: 6.5169

>NTDB_id=610510 LDO52_RS02260 WP_225554186.1 458535..459392(+) (tonB2) [Acinetobacter pseudolwoffii strain XMC5X702]
MPLVRTWWKDPVFSSAVLTAGILHLIVLTLEFGMPQDRETSTKEIAVSLRQTDEKIEHADFLAQTDQQGSGKFREAHRMS
SDMPSPLLEQKAGEEQQESPDLLQQKQELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFRQKVEFYGNQYYPEAAKQQNLAGEVRLMLILNQNGGIRAIRLIDSSGHAML
DEAAKSSVRKAAPFGAFDAKMKEISELRIIRTWRFDPAEAEFEVR

Nucleotide

• Length: 858 bp

>NTDB_id=610510 LDO52_RS02260 WP_225554186.1 458535..459392(+) (tonB2) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGCCTCTGGTCAGAACCTGGTGGAAAGATCCAGTGTTTAGCAGTGCCGTGCTCACCGCAGGCATTCTGCATTTGATCGT
ATTGACACTGGAATTTGGTATGCCGCAAGATCGGGAGACCAGCACCAAAGAAATTGCAGTCAGCTTGCGACAAACAGATG
AAAAAATTGAACACGCTGATTTTCTGGCCCAGACAGACCAGCAAGGTTCTGGCAAGTTTCGAGAAGCGCACCGGATGTCG
AGTGATATGCCATCTCCTTTGTTAGAGCAGAAGGCAGGGGAAGAACAACAAGAAAGTCCGGATCTGCTGCAACAGAAACA
GGAACTCAGTTTTGAAGAAAAAGTGCTGATGACCACCTTGAGCTGGCAAAAACAGGCAGAAGAAAATCAGCGTAAAAAAA
TGCAGGAGCAGTTACAAAGCCAGTTTCAGGCCAAAGCAGCCATGGTGGCCAGTCTGGAAGCGCAATATTTACAGCGTCAG
CAAAATTTTAGTCGTCAGCAAAAAATTAAAACTGTGGATGGCATTCAATCCAAGCAGGATGTCTCCGCAGCCTATCTGGA
AAAGTTCCGTCAGAAAGTAGAGTTTTATGGCAATCAGTATTATCCGGAAGCTGCCAAGCAGCAGAATCTGGCAGGTGAAG
TTCGTCTGATGTTGATCCTGAATCAGAATGGCGGGATTCGTGCCATCCGATTAATTGACAGTTCAGGACATGCCATGCTG
GATGAGGCTGCGAAATCTTCTGTACGTAAAGCGGCGCCATTTGGTGCGTTTGATGCCAAAATGAAGGAAATTTCTGAATT
GCGGATTATCCGAACCTGGCGTTTTGATCCGGCTGAAGCAGAGTTTGAAGTACGTTAA

Domains

Predicted by InterproScan.

• Gram-negative bacterial TonB protein C-terminal (TonB_C) (198-275)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tonB2	Acinetobacter baumannii D1279779	72.76	97.895	0.712