Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LDO52_RS00755 Genome accession   NZ_CP084300
Coordinates   165003..166157 (-) Length   384 a.a.
NCBI ID   WP_005094531.1    Uniprot ID   A0A2H9YPN1
Organism   Acinetobacter pseudolwoffii strain XMC5X702     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 160003..171157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO52_RS00735 (LDO52_00735) - 161085..161630 (-) 546 WP_005173845.1 glutathione peroxidase -
  LDO52_RS00740 (LDO52_00740) - 161822..162718 (+) 897 WP_005173847.1 DMT family transporter -
  LDO52_RS00745 (LDO52_00745) - 163160..163729 (-) 570 WP_074383691.1 L-threonylcarbamoyladenylate synthase -
  LDO52_RS00750 (LDO52_00750) dprA 163771..164910 (-) 1140 WP_100329712.1 DNA-processing protein DprA Machinery gene
  LDO52_RS00755 (LDO52_00755) tsaP 165003..166157 (-) 1155 WP_005094531.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LDO52_RS00760 (LDO52_00760) def 166277..166807 (+) 531 WP_225553500.1 peptide deformylase -
  LDO52_RS00765 (LDO52_00765) - 166900..167313 (+) 414 WP_225553502.1 DUF2946 family protein -
  LDO52_RS00770 (LDO52_00770) - 167386..169407 (+) 2022 WP_225553504.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42112.43 Da        Isoelectric Point: 9.0682

>NTDB_id=610497 LDO52_RS00755 WP_005094531.1 165003..166157(-) (tsaP) [Acinetobacter pseudolwoffii strain XMC5X702]
MKKVLKGMPFFSALGFKNQMLALAVCVGVGMGTIHSAEAAPARNVNPPALKASAPNIYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCDGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLMAPDSVQGTPYILGTADQRVLAGKGQKVYVRGNGLVVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
SEGEVTTLELTDSYNAEVRRGDRVLAEYDPMLPTLFYPTNAESIVPGGQIVRVLGSIGTAARHSVVTLDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQVMVFKAFDQLSYAYVLDSELPIKVGAGIQPPLLED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=610497 LDO52_RS00755 WP_005094531.1 165003..166157(-) (tsaP) [Acinetobacter pseudolwoffii strain XMC5X702]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTCGCCGTTTGTGT
CGGTGTCGGTATGGGGACTATTCATTCTGCCGAGGCCGCACCTGCACGTAATGTCAATCCGCCGGCATTAAAAGCCAGTG
CACCCAATATTTATGTGGTCAAAAAAGGCGATACCCTCTGGGACATCTCAAAACGCTTTTTGAAAAACCCGGTGCGTTGG
CCTGAAATCTGGGCCAGCAACAAGCATGTGAAAAATCCACATTGGATTTTCCCGGGCGATCGCCTGTTGATGTGTGATTA
CCAGGGCCGTCCGATTATTGGCAAAGATGAAGGTGATGGTTGTGACGGTATTATCAGCCGCTATCTGGGCAGCACCTCTC
TGCAACCTCAGATTCGGGTTGAATCTTTAAACAATACCATTCCAGTGATTCCACTAGAACATATCAAACAGTGGCTAGAG
CGCTATACCCTGATGGCGCCTGATTCAGTTCAAGGCACCCCATACATTCTTGGAACTGCAGATCAGCGCGTACTGGCGGG
CAAAGGCCAGAAAGTCTATGTACGTGGTAACGGTCTGGTCGTTGGTCAACGCTATGCCGTTTATCGTGAAGCTGAGCCTT
ATGTATTTACCGATGCCAATGGCAAGAAATATACTGCTGCACTCGAGCTGCAACAGGTGGCATCTGGTATTGCGGTACGT
AGTGAAGGTGAGGTAACCACACTGGAGCTGACTGACAGTTATAACGCGGAGGTGCGTCGCGGTGACCGCGTACTCGCTGA
ATACGACCCGATGTTACCGACGCTGTTCTACCCAACCAATGCAGAAAGTATTGTGCCTGGTGGTCAGATTGTGCGTGTAT
TGGGGTCGATTGGTACTGCAGCACGTCATAGTGTCGTCACCCTTGACCGTGGTACGGCACATGGCGTTCAGACAGGTCAT
GTCTTTAGCGTAAACCAGAAAGGTGAAGTGGTGACTGATCCGAAGACTAAAGAACGGGTGCAATTGCCAGGTGAGCGTAT
TGGTCAGGTCATGGTCTTTAAAGCCTTCGATCAATTGAGCTATGCCTATGTGCTGGATAGCGAGCTTCCAATTAAAGTGG
GTGCCGGCATTCAGCCTCCTTTGTTAGAAGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H9YPN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.753

100

0.669