Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NMG40_RS01905 Genome accession   NZ_CP101325
Coordinates   417381..418739 (+) Length   452 a.a.
NCBI ID   WP_014602384.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LG2-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412381..423739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG40_RS01885 - 413218..413784 (-) 567 WP_003084491.1 hypothetical protein -
  NMG40_RS01890 rsmD 413787..414383 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NMG40_RS01895 - 414383..415870 (-) 1488 WP_003102862.1 pitrilysin family protein -
  NMG40_RS01900 - 415863..417260 (-) 1398 WP_003084498.1 pitrilysin family protein -
  NMG40_RS01905 pilA 417381..418739 (+) 1359 WP_014602384.1 signal recognition particle-docking protein FtsY Machinery gene
  NMG40_RS01910 ftsE 418736..419407 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  NMG40_RS01915 ftsX 419407..420414 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  NMG40_RS01920 rpoH 420528..421382 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  NMG40_RS01925 - 421447..422052 (+) 606 WP_003084511.1 hypothetical protein -
  NMG40_RS01930 mtgA 422057..422788 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  NMG40_RS01935 - 422825..423202 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  NMG40_RS01940 thiS 423305..423505 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48098.50 Da        Isoelectric Point: 4.5525

>NTDB_id=610490 NMG40_RS01905 WP_014602384.1 417381..418739(+) (pilA) [Pseudomonas aeruginosa strain LG2-2]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSAS
IGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQV
DVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDA
VQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTK
LDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=610490 NMG40_RS01905 WP_014602384.1 417381..418739(+) (pilA) [Pseudomonas aeruginosa strain LG2-2]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCG
CTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGC
ATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCT
GCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGG
CCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTC
GACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGC
GAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCGCCGTGGAGCAGTTGC
AGGTCTGGGGCGAGCGCAACCGTATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCG
GTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCTTGCATACCAAGGACAACCTGAT
GGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACG
CCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAA
CTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGG
CGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(162-227)

SRP54-type protein, GTPase domain (SRP54)

(247-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.235

96.018

0.454