Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LDO71_RS17065 Genome accession   NZ_CP084297
Coordinates   3593020..3593346 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain LHC22-2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3588020..3598346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS17045 (LDO71_17045) - 3588122..3588751 (-) 630 WP_225545945.1 FHA domain-containing protein -
  LDO71_RS17050 (LDO71_17050) gspD 3588792..3591068 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  LDO71_RS17055 (LDO71_17055) - 3591110..3591946 (-) 837 WP_000870031.1 type II secretion system protein N -
  LDO71_RS17060 (LDO71_17060) gspN 3591946..3592689 (-) 744 WP_000730343.1 type II secretion system protein N -
  LDO71_RS17065 (LDO71_17065) hns 3593020..3593346 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LDO71_RS17070 (LDO71_17070) - 3593541..3593981 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  LDO71_RS17075 (LDO71_17075) - 3593989..3595182 (-) 1194 WP_000681775.1 membrane protein -
  LDO71_RS17080 (LDO71_17080) - 3595192..3596031 (-) 840 WP_001230202.1 hypothetical protein -
  LDO71_RS17085 (LDO71_17085) - 3596040..3596807 (-) 768 WP_000897415.1 uroporphyrinogen-III synthase -
  LDO71_RS17090 (LDO71_17090) hemC 3596812..3597729 (-) 918 WP_065725588.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=610486 LDO71_RS17065 WP_000801427.1 3593020..3593346(-) (hns) [Acinetobacter baumannii strain LHC22-2]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=610486 LDO71_RS17065 WP_000801427.1 3593020..3593346(-) (hns) [Acinetobacter baumannii strain LHC22-2]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1