Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   LDO71_RS15910 Genome accession   NZ_CP084297
Coordinates   3343941..3344741 (-) Length   266 a.a.
NCBI ID   WP_002027454.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LHC22-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3338941..3349741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS15890 (LDO71_15890) - 3340006..3340704 (-) 699 WP_000058788.1 YfgM family protein -
  LDO71_RS15895 (LDO71_15895) hisS 3340733..3342025 (-) 1293 WP_000095254.1 histidine--tRNA ligase -
  LDO71_RS15900 (LDO71_15900) ispG 3342022..3343137 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  LDO71_RS15905 (LDO71_15905) - 3343159..3343950 (-) 792 WP_000405163.1 helix-turn-helix domain-containing protein -
  LDO71_RS15910 (LDO71_15910) pilF 3343941..3344741 (-) 801 WP_002027454.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  LDO71_RS15915 (LDO71_15915) rlmN 3344757..3345989 (-) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  LDO71_RS15920 (LDO71_15920) ndk 3346112..3346543 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  LDO71_RS15925 (LDO71_15925) iscX 3346657..3346857 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  LDO71_RS15930 (LDO71_15930) - 3346957..3347508 (-) 552 WP_225545900.1 phosphatase PAP2 family protein -
  LDO71_RS15935 (LDO71_15935) - 3347533..3348831 (-) 1299 WP_086261868.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30124.47 Da        Isoelectric Point: 9.2307

>NTDB_id=610479 LDO71_RS15910 WP_002027454.1 3343941..3344741(-) (pilF) [Acinetobacter baumannii strain LHC22-2]
MSTPKLKIMLCMGVAVALLTSGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=610479 LDO71_RS15910 WP_002027454.1 3343941..3344741(-) (pilF) [Acinetobacter baumannii strain LHC22-2]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGACAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCAGAACATTACTTTAAGCGTGCAATTTCATCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCCTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.624

100

0.996
  pilF Acinetobacter baylyi ADP1

74.231

97.744

0.726