Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LDO71_RS02370 Genome accession   NZ_CP084297
Coordinates   493369..494253 (+) Length   294 a.a.
NCBI ID   WP_225546112.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LHC22-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 488369..499253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS02345 (LDO71_02345) - 488768..490015 (-) 1248 WP_000893466.1 YihY family inner membrane protein -
  LDO71_RS02350 (LDO71_02350) wrbA 490303..490896 (+) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  LDO71_RS02355 (LDO71_02355) - 490949..491524 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  LDO71_RS02360 (LDO71_02360) - 491597..492310 (-) 714 WP_000201548.1 DUF3108 domain-containing protein -
  LDO71_RS02365 (LDO71_02365) - 492467..493138 (-) 672 WP_001193961.1 hypothetical protein -
  LDO71_RS02370 (LDO71_02370) tonB2 493369..494253 (+) 885 WP_225546112.1 energy transducer TonB Machinery gene
  LDO71_RS02375 (LDO71_02375) ybeY 494343..494819 (-) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  LDO71_RS02380 (LDO71_02380) - 494829..495917 (-) 1089 WP_000122983.1 PhoH family protein -
  LDO71_RS02385 (LDO71_02385) miaB 495955..497406 (-) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33652.51 Da        Isoelectric Point: 9.0935

>NTDB_id=610464 LDO71_RS02370 WP_225546112.1 493369..494253(+) (tonB2) [Acinetobacter baumannii strain LHC22-2]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSSHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=610464 LDO71_RS02370 WP_225546112.1 493369..494253(+) (tonB2) [Acinetobacter baumannii strain LHC22-2]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAAGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCGGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997