Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LD024_RS14890 Genome accession   NZ_CP084290
Coordinates   3109795..3110409 (-) Length   204 a.a.
NCBI ID   WP_042314181.1    Uniprot ID   -
Organism   Citrobacter werkmanii strain LHC5-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3104795..3115409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LD024_RS14875 (LD024_14875) helD 3105019..3107073 (-) 2055 WP_227409812.1 DNA helicase IV -
  LD024_RS14880 (LD024_14880) - 3107199..3107645 (+) 447 WP_038639436.1 YccF domain-containing protein -
  LD024_RS14885 (LD024_14885) yccS 3107664..3109817 (+) 2154 WP_160955639.1 YccS family putative transporter -
  LD024_RS14890 (LD024_14890) sxy/tfoX 3109795..3110409 (-) 615 WP_042314181.1 TfoX/Sxy family DNA transformation protein Regulator
  LD024_RS14895 (LD024_14895) sulA 3110626..3111135 (+) 510 WP_038639432.1 SOS-induced cell division inhibitor SulA -
  LD024_RS14900 (LD024_14900) ompA 3111493..3112539 (+) 1047 WP_227409813.1 porin OmpA -
  LD024_RS14905 (LD024_14905) matP 3112638..3113090 (-) 453 WP_042314187.1 macrodomain Ter protein MatP -
  LD024_RS14910 (LD024_14910) - 3113276..3115036 (+) 1761 WP_227409814.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23122.63 Da        Isoelectric Point: 9.3864

>NTDB_id=610429 LD024_RS14890 WP_042314181.1 3109795..3110409(-) (sxy/tfoX) [Citrobacter werkmanii strain LHC5-1]
MKELSYAKIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSVQYCAKNSPVWLTFIKRGRPVVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRTLGAQMCWLKLRQNN
PALTVKILYALEGAVGGVHEAALPAVRRQELVEWVSSLTPKPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=610429 LD024_RS14890 WP_042314181.1 3109795..3110409(-) (sxy/tfoX) [Citrobacter werkmanii strain LHC5-1]
ATGAAAGAACTTTCTTATGCAAAGATCTATAAATCACAAGAATATCTGGCGTCTCTGGGAACAATTCACTATCGCTCATT
ATTTGGCAGCTACAGTTTGACGGTTGGGGATACGGTCTTTGCTATGGTCGCCAGCGGTGAGTTATATCTTCGGGCCTGCG
AACAGAGCGTACAGTACTGTGCAAAAAATTCGCCTGTCTGGCTGACATTTATAAAGCGCGGGCGTCCGGTGGTACTCAAC
TACTATCAGGTGAATGATGCGCTGTGGCAAAACCAGCAGCAATTGGTGTCGTTATCGCGGTACTCATTGGATGCTGCTGT
TAAGGAAAAACAGAGTCGCTTTGCTCAACATCGTCTGCGGGAACTACCAAATATGACGTTTCATCTGGAGACCCTGCTAA
ATGAAGCAGGAATTAAAGATGAGGGAACATTGCGAACGTTGGGCGCCCAAATGTGCTGGCTGAAACTGCGGCAAAATAAT
CCAGCCCTGACGGTAAAAATACTTTATGCCCTTGAAGGCGCGGTCGGTGGCGTGCATGAAGCAGCGCTCCCGGCGGTCCG
TCGCCAGGAGCTGGTGGAGTGGGTCAGTTCCCTTACGCCGAAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686