Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LDZ23_RS01195 Genome accession   NZ_CP084283
Coordinates   236631..238148 (-) Length   505 a.a.
NCBI ID   WP_008351688.1    Uniprot ID   -
Organism   Caballeronia zhejiangensis strain A33_M4_a     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 231631..243148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDZ23_RS01170 - 232449..233081 (-) 633 WP_008351694.1 LON peptidase substrate-binding domain-containing protein -
  LDZ23_RS01175 rapZ 233138..234010 (-) 873 WP_008351693.1 RNase adapter RapZ -
  LDZ23_RS01180 hprK 234074..235042 (-) 969 WP_008351692.1 HPr(Ser) kinase/phosphatase -
  LDZ23_RS01185 ptsN 235217..235672 (-) 456 WP_008351691.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LDZ23_RS01190 raiA 236087..236446 (-) 360 WP_008351690.1 ribosome-associated translation inhibitor RaiA -
  LDZ23_RS01195 rpoN/rpoN1 236631..238148 (-) 1518 WP_008351688.1 RNA polymerase factor sigma-54 Machinery gene
  LDZ23_RS01200 lptB 238302..239069 (-) 768 WP_085955336.1 LPS export ABC transporter ATP-binding protein -
  LDZ23_RS01205 lptA 239081..239767 (-) 687 WP_033536543.1 lipopolysaccharide transport periplasmic protein LptA -
  LDZ23_RS01210 lptC 239798..240400 (-) 603 WP_008351682.1 LPS export ABC transporter periplasmic protein LptC -
  LDZ23_RS01215 - 240405..240944 (-) 540 WP_008351681.1 HAD family hydrolase -
  LDZ23_RS01220 kdsD 240944..241927 (-) 984 WP_008351678.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55399.42 Da        Isoelectric Point: 4.8767

>NTDB_id=610402 LDZ23_RS01195 WP_008351688.1 236631..238148(-) (rpoN/rpoN1) [Caballeronia zhejiangensis strain A33_M4_a]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAIAQNPLLENDDDWIASPLRVAADGSLIAAPATSSAPPDSM
MSNGSTSSSSSSERSENSEPQGVDEYNGLGSDSGQDSSSWNLEDYGRSNNASDDDDLPPLQIHESTTTLRDHLTAQLRMT
AANQRDRALVTFLIESLDEDGYLTASLDEVQTDLPEELEVDLDELSAALALLQSFDPPGVGGRSASECLKLQLLRLDGSP
TRTLALEIVTNHLELLAARDFTRLRKQLKASDDALRDAHLLIKSLEPFPGAAYGKSEADYVVPDILVRKTSGGWTAELNP
EIVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEEPKTPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=610402 LDZ23_RS01195 WP_008351688.1 236631..238148(-) (rpoN/rpoN1) [Caballeronia zhejiangensis strain A33_M4_a]
ATGAAAGCCAGCCTCCAACTCCGCCTCTCGCAGCATCTTGCGCTGACCCCGCAACTTCAGCAGTCGATCCGGCTGCTGCA
GTTGTCGACGCTCGAACTGCAGCAGGAAGTCGCGATGGCCATCGCTCAGAATCCGCTGCTCGAGAACGACGACGACTGGA
TTGCGAGCCCTTTGCGCGTCGCCGCGGACGGTTCGCTGATCGCGGCGCCGGCCACATCGAGCGCGCCGCCCGATTCGATG
ATGAGCAACGGCTCCACGTCGAGCAGTTCCAGTTCCGAGCGTTCGGAAAACAGCGAGCCGCAAGGCGTCGACGAGTACAA
CGGCCTGGGCTCGGACAGCGGTCAGGACTCGAGTTCATGGAATCTGGAAGACTACGGCCGTTCTAACAACGCTTCCGACG
ACGACGATCTGCCGCCGCTGCAAATCCACGAATCGACCACGACGCTGCGCGACCATCTGACCGCGCAGTTGCGCATGACC
GCGGCGAATCAGCGCGATCGGGCGCTCGTCACGTTTCTGATCGAGTCGCTGGACGAGGACGGGTATCTCACGGCATCGCT
CGATGAAGTCCAAACCGATCTTCCCGAAGAACTCGAAGTCGATCTCGACGAACTGAGCGCGGCACTCGCGTTGCTGCAGA
GTTTCGATCCACCCGGCGTGGGCGGACGCTCGGCATCGGAATGCTTGAAGCTGCAGTTGCTGCGGCTCGATGGCTCGCCA
ACGCGCACGCTGGCGCTCGAGATCGTCACGAATCATCTGGAATTGCTCGCCGCGCGCGACTTCACGCGCCTGCGGAAACA
GTTGAAGGCAAGCGACGACGCCCTCCGGGACGCACATTTGCTGATCAAGTCGCTGGAGCCGTTTCCGGGCGCGGCGTATG
GCAAGAGCGAAGCAGACTACGTCGTTCCGGACATTCTCGTGCGCAAGACGTCGGGCGGCTGGACGGCTGAACTCAACCCG
GAGATCGTGCCGAAGCTGCGCATCAACCATTTGTACGCGAACATCCTGCGCAACAATCGCGGCGATCCGGGCAGCGGTTC
GTTGCGTCAGCAGCTTCAGGAAGCGCGCTGGCTCATCAAGAACATTCAGCAGAGGTTTGAGACGATCCTGCGTGTCGCGC
AGGCAATTGTCGAGCGTCAGAAGAACTTTTTTGCACATGGCGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAGATTGCT
GATACGCTGGGTTTACACGAGTCGACGGTTTCTCGTGTGACCACAGGCAAGTACATGCTCACCCCATTCGGGACGCTTGA
ATTTAAGTACTTCTTTGGATCGCACGTTTCGACCGACACAGGAGGCGCGGCATCGTCAACGGCGATCCGGGCCCTCATCA
AGCAACTGATAGGAGCGGAAGAGCCCAAAACTCCTCTTTCAGACAGCCGCATCGCCGAACTGCTGGCGGAACAAGGATTC
GTGGTAGCGCGGCGCACCGTAGCCAAGTACCGCGAAGCCCTCAAGATCCCGGCAGTGAATCTGCGCAAGTCTCTATGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(142-332)

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

65.941

100

0.659