Detailed information NTG0610397

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LDZ21_RS12475
• Genome accession: NZ_CP084271
• Coordinates: 2608095..2609339 (+)
• Length: 414 a.a.
• NCBI ID: WP_244793577.1
• Uniprot ID: -
• Organism: Caballeronia grimmiae strain Lep1A1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2603095..2614339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDZ21_RS12445	pth	2603598..2604200 (+)	603	WP_035961801.1	aminoacyl-tRNA hydrolase	-
LDZ21_RS12450	hisC	2604222..2605292 (+)	1071	WP_244793574.1	histidinol-phosphate transaminase	-
LDZ21_RS12455	-	2605317..2605574 (-)	258	WP_035961803.1	YfhL family 4Fe-4S dicluster ferredoxin	-
LDZ21_RS12460	-	2605799..2606359 (-)	561	WP_244793575.1	hypothetical protein	-
LDZ21_RS12465	coaD	2606610..2607116 (-)	507	WP_035961806.1	pantetheine-phosphate adenylyltransferase	-
LDZ21_RS12470	rsmD	2607244..2607879 (-)	636	WP_244793576.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LDZ21_RS12475	pilA	2608095..2609339 (+)	1245	WP_244793577.1	signal recognition particle-docking protein FtsY	Machinery gene
LDZ21_RS12480	-	2609411..2610043 (-)	633	WP_244793578.1	LysE/ArgO family amino acid transporter	-
LDZ21_RS12485	maiA	2610040..2610684 (-)	645	WP_035961810.1	maleylacetoacetate isomerase	-
LDZ21_RS12490	-	2610681..2611379 (-)	699	WP_244793579.1	fumarylacetoacetate hydrolase family protein	-
LDZ21_RS12495	ybiB	2611743..2612714 (+)	972	WP_152562537.1	DNA-binding protein YbiB	-

Sequence

Protein

• Length: 414 a.a.
• Molecular weight: 44267.48 Da
• Isoelectric Point: 4.5277

>NTDB_id=610397 LDZ21_RS12475 WP_244793577.1 2608095..2609339(+) (pilA) [Caballeronia grimmiae strain Lep1A1]
MFSFFKRFKKPADEPLDTSAEETAEAADEEASAPVIEAELDREPAVDAAIPADAPLAADPEPAEETATSVAPVSPAAGEA
PKPYWQGRTQSQWVRGPETDEASEEIVPPPEPDAAAKKSWMSRLKHGLSKTSSSLTGIFVGAKIDEDLYEELETALLMSD
AGVDATEFLLESLREKVRTERLTDASQVKAALRALLVDLLRPLEKSLMLGRAQPLVMMIAGVNGVGKTTSIGKLAKHLQS
FNQSVLLAAGDTFRAAAREQLTVWGERNNVMVIAQESGDAAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKV
RRVIAKAMPDAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDL
QPFSANEFADALLG

Nucleotide

• Length: 1245 bp

>NTDB_id=610397 LDZ21_RS12475 WP_244793577.1 2608095..2609339(+) (pilA) [Caballeronia grimmiae strain Lep1A1]
ATGTTCAGCTTCTTCAAACGATTCAAAAAGCCGGCTGACGAGCCGCTCGATACGTCCGCAGAGGAAACAGCGGAAGCGGC
GGACGAAGAAGCGTCCGCGCCCGTCATCGAAGCGGAGCTGGACCGCGAACCCGCGGTGGACGCCGCGATTCCGGCCGACG
CGCCGCTCGCCGCCGACCCGGAACCCGCCGAGGAGACCGCGACCTCTGTCGCGCCTGTTTCTCCCGCCGCCGGTGAAGCG
CCGAAGCCCTATTGGCAAGGCCGCACCCAGTCGCAATGGGTGCGCGGCCCCGAGACCGACGAGGCGAGCGAGGAAATCGT
CCCGCCGCCGGAGCCGGATGCCGCCGCGAAGAAATCCTGGATGTCGCGGTTGAAGCACGGCCTGTCCAAAACAAGTTCGA
GCCTGACGGGCATTTTCGTCGGCGCGAAGATCGACGAAGACCTTTACGAAGAGCTCGAAACCGCGCTCCTGATGTCCGAC
GCCGGCGTCGATGCCACGGAGTTCCTGCTTGAATCGCTGCGCGAGAAAGTGCGCACGGAGCGCCTGACGGACGCATCGCA
GGTGAAGGCCGCCTTGCGTGCGCTGCTCGTCGACCTCTTGCGTCCGCTCGAAAAGTCGCTGATGCTCGGCCGCGCGCAGC
CGCTCGTGATGATGATCGCGGGCGTCAACGGCGTCGGCAAGACGACGAGCATCGGCAAGCTGGCGAAGCATCTTCAGAGC
TTCAATCAATCCGTGCTGCTCGCGGCCGGCGACACCTTCCGCGCCGCCGCCCGCGAACAGCTGACGGTCTGGGGCGAGCG
CAACAACGTCATGGTCATCGCACAGGAAAGCGGCGATGCGGCCGCGGTCATCTTCGACGCCGTCGGCGCGGCGCGCGCTC
GCAAGATCGACGTGATGATGGCCGACACCGCCGGCCGTCTGCCGACGCAATTGCATCTGATGGAAGAACTGCGCAAGGTG
CGCCGCGTGATCGCGAAGGCGATGCCGGATGCGCCGCACGAAGTGTTGCTGGTCATCGACGCCAACACGGGACAAAACGC
GCTCGCGCAAGTGAAGGCGTTCGACGATGCGCTCGGGCTGACCGGTCTCATCGTGACGAAGCTGGACGGCACGGCGAAGG
GCGGCATTCTCGCGGCCATCGCGCGGCAGCGTCCGATTCCGGTCTACTTCATCGGCGTCGGCGAGAAGGTGGAAGACTTG
CAGCCGTTCAGCGCGAACGAATTCGCCGACGCGCTGCTCGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (215-414)

• SRP54-type protein, helical bundle domain (SRP54_N) (133-193)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.905	100	0.527