Detailed information NTG0610382

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LDZ27_RS13220
• Genome accession: NZ_CP084265
• Coordinates: 2825551..2826822 (+)
• Length: 423 a.a.
• NCBI ID: WP_244814518.1
• Uniprot ID: -
• Organism: Caballeronia sp. Lep1P3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2820551..2831822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDZ27_RS13185	pth	2820625..2821227 (+)	603	WP_244814511.1	aminoacyl-tRNA hydrolase	-
LDZ27_RS13190	hisC	2821248..2822318 (+)	1071	WP_244814512.1	histidinol-phosphate transaminase	-
LDZ27_RS13195	-	2822332..2822589 (-)	258	WP_244814513.1	YfhL family 4Fe-4S dicluster ferredoxin	-
LDZ27_RS13200	-	2823053..2823619 (-)	567	WP_244814514.1	hypothetical protein	-
LDZ27_RS13205	-	2823715..2824068 (+)	354	WP_244814515.1	winged helix-turn-helix domain-containing protein	-
LDZ27_RS13210	coaD	2824089..2824595 (-)	507	WP_244814516.1	pantetheine-phosphate adenylyltransferase	-
LDZ27_RS13215	rsmD	2824696..2825331 (-)	636	WP_244814517.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LDZ27_RS13220	pilA	2825551..2826822 (+)	1272	WP_244814518.1	signal recognition particle-docking protein FtsY	Machinery gene
LDZ27_RS13225	-	2826870..2827502 (-)	633	WP_244814519.1	LysE/ArgO family amino acid transporter	-
LDZ27_RS13230	maiA	2827499..2828143 (-)	645	WP_244814520.1	maleylacetoacetate isomerase	-
LDZ27_RS13235	-	2828140..2828838 (-)	699	WP_244814521.1	fumarylacetoacetate hydrolase family protein	-
LDZ27_RS13240	ybiB	2829187..2830158 (+)	972	WP_244814522.1	DNA-binding protein YbiB	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 45268.30 Da
• Isoelectric Point: 4.5178

>NTDB_id=610382 LDZ27_RS13220 WP_244814518.1 2825551..2826822(+) (pilA) [Caballeronia sp. Lep1P3]
MFSFFKRFKKPADAPPETSADETTEAAEDEEASAPDLAHEAANEAANDTAIEAELEREPAVDAAIPPEAPPPADPAPAEE
SATPAASGQAKPYWQGRTQSQWLRAPETDEASEEIVPPPEPDAAARKSWISRLRHGLSKTSSSLTGIFVGAKIDEDLYEE
LETALLMSDAGVDATEYLLESLREKVRTERLTDASQVKAALRALLVDLLRPLEKSLMLGRAQPLVMMIAGVNGVGKTTSI
GKLAKHLQSFNQSVLLAAGDTFRAAAREQLTVWGERNNVTVIAQESGDAAAVIFDAVGAARARKIDVMMADTAGRLPTQL
HLMEELRKVRRVVAKAMPDAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFI
GVGEKVEDLQPFKADEFADALLG

Nucleotide

• Length: 1272 bp

>NTDB_id=610382 LDZ27_RS13220 WP_244814518.1 2825551..2826822(+) (pilA) [Caballeronia sp. Lep1P3]
ATGTTCAGCTTTTTCAAACGATTCAAAAAGCCGGCTGACGCGCCGCCCGAGACGTCCGCCGACGAGACGACCGAAGCCGC
CGAGGACGAGGAAGCGTCCGCGCCTGACCTCGCGCACGAGGCCGCGAACGAGGCCGCGAACGACACCGCGATCGAGGCGG
AACTGGAGCGCGAGCCGGCCGTCGACGCCGCGATTCCGCCCGAAGCGCCGCCGCCCGCCGATCCCGCGCCCGCGGAAGAA
TCCGCGACGCCCGCCGCAAGCGGACAGGCGAAGCCGTATTGGCAGGGCCGCACGCAGTCGCAATGGCTGCGCGCGCCCGA
AACCGACGAGGCGAGCGAAGAAATCGTGCCGCCGCCAGAGCCGGACGCCGCCGCGCGCAAGTCGTGGATTTCGCGGCTGC
GGCACGGCCTGTCGAAAACGAGTTCCAGCCTGACCGGGATTTTCGTCGGCGCGAAGATCGACGAAGACCTGTACGAAGAA
CTCGAAACCGCGCTGCTGATGTCCGACGCCGGCGTGGACGCCACCGAATATCTGCTCGAATCGCTGCGCGAAAAAGTGCG
CACGGAACGGCTGACGGACGCCTCGCAGGTGAAGGCCGCGTTGCGTGCGCTGCTCGTCGATCTGCTGCGTCCGCTCGAGA
AATCGCTGATGCTGGGCCGCGCGCAGCCGCTCGTCATGATGATCGCGGGCGTGAACGGCGTCGGCAAGACGACGAGCATC
GGCAAGCTGGCCAAGCATTTGCAGAGCTTCAACCAGTCGGTGCTGCTCGCCGCCGGCGATACGTTCCGCGCCGCCGCGCG
CGAACAGCTCACCGTCTGGGGCGAGCGCAACAACGTGACGGTCATCGCGCAGGAAAGCGGCGATGCCGCCGCGGTCATCT
TCGATGCGGTCGGCGCGGCGCGCGCGCGCAAGATCGACGTGATGATGGCCGACACCGCCGGCCGGCTACCGACACAGCTT
CATCTCATGGAAGAGTTGCGCAAGGTCCGGCGCGTCGTTGCGAAGGCGATGCCCGACGCGCCGCATGAAGTGCTGCTCGT
CATCGATGCGAACACCGGTCAGAACGCGCTCGCGCAAGTGAAGGCATTCGACGACGCGCTCGGACTCACCGGCCTCATCG
TGACGAAGCTGGACGGCACCGCGAAAGGCGGCATCCTCGCCGCCATCGCGCGGCAGCGGCCGATTCCGGTGTACTTCATC
GGCGTCGGCGAAAAGGTCGAAGATTTGCAGCCCTTCAAGGCCGACGAATTCGCCGACGCTCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (224-423)

• SRP54-type protein, helical bundle domain (SRP54_N) (142-202)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.247	100	0.534