Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LDZ27_RS13115 Genome accession   NZ_CP084265
Coordinates   2807540..2809057 (+) Length   505 a.a.
NCBI ID   WP_244814500.1    Uniprot ID   -
Organism   Caballeronia sp. Lep1P3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2802540..2814057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDZ27_RS13090 kdsD 2803738..2804721 (+) 984 WP_244814496.1 arabinose 5-phosphate isomerase KdsD -
  LDZ27_RS13095 - 2804721..2805257 (+) 537 WP_244814497.1 HAD family hydrolase -
  LDZ27_RS13100 lptC 2805262..2805864 (+) 603 WP_244814498.1 LPS export ABC transporter periplasmic protein LptC -
  LDZ27_RS13105 lptA 2805893..2806600 (+) 708 WP_244814499.1 lipopolysaccharide transport periplasmic protein LptA -
  LDZ27_RS13110 lptB 2806612..2807379 (+) 768 WP_244816144.1 LPS export ABC transporter ATP-binding protein -
  LDZ27_RS13115 rpoN/rpoN1 2807540..2809057 (+) 1518 WP_244814500.1 RNA polymerase factor sigma-54 Machinery gene
  LDZ27_RS13120 hpf 2809241..2809600 (+) 360 WP_244814501.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LDZ27_RS13125 ptsN 2809945..2810400 (+) 456 WP_159835156.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LDZ27_RS13130 hprK 2810587..2811555 (+) 969 WP_008351692.1 HPr(Ser) kinase/phosphatase -
  LDZ27_RS13135 rapZ 2811635..2812531 (+) 897 WP_244814502.1 RNase adapter RapZ -
  LDZ27_RS13140 - 2812566..2813225 (+) 660 WP_244814503.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55465.58 Da        Isoelectric Point: 4.9302

>NTDB_id=610381 LDZ27_RS13115 WP_244814500.1 2807540..2809057(+) (rpoN/rpoN1) [Caballeronia sp. Lep1P3]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDDWIASPLRVASDGSLIASTAAGSTAPEPM
MSNGSTSSSSSSERSESSEPQGVDEYNGMASDGGADSSNWNLEDYGRSNNASDDDDLPPLQIHESTTTLRDHLTAQMRMT
QANQRDRALITFLIESLDEDGYLTSSLDEIQADLPAELEVDVDELSAALALLQSFDPPGVGGRSASECLKLQLLRLDASP
TRTLALEIVTNHLELLAARDFTRLRKQLKATDDALRDAHLLIRSLEPFPGAAYGKSEADYVVPDILVRKMASGWTAELNP
EIVPRLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKTPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=610381 LDZ27_RS13115 WP_244814500.1 2807540..2809057(+) (rpoN/rpoN1) [Caballeronia sp. Lep1P3]
ATGAAAGCCAGCCTCCAACTCCGCCTATCGCAGCATCTTGCGCTGACCCCGCAACTGCAGCAGTCCATCCGGCTGCTGCA
GCTGTCGACGCTCGAACTGCAGCAGGAAGTGGCGATGGCCGTCGCGCAAAATCCGCTGCTGGAGAACGACGACGACTGGA
TCGCAAGCCCGTTGCGCGTCGCGTCGGACGGCTCGCTCATCGCGTCCACGGCCGCCGGCAGTACGGCGCCGGAACCGATG
ATGAGCAACGGCTCGACGTCGAGTTCGTCGAGTTCCGAACGCTCCGAGAGCAGCGAGCCGCAAGGCGTCGACGAATATAA
CGGCATGGCGTCCGATGGCGGCGCCGACTCCAGCAACTGGAATCTCGAGGACTACGGCCGCTCGAACAACGCATCCGACG
ACGACGACCTCCCCCCGCTGCAAATCCACGAATCCACGACGACGCTGCGCGATCACCTGACTGCGCAAATGCGCATGACG
CAGGCGAATCAGCGCGACCGTGCGCTCATCACGTTTCTCATCGAATCGCTGGACGAGGACGGCTACCTCACCTCATCGCT
TGACGAGATTCAGGCGGATTTGCCGGCAGAACTGGAAGTCGATGTCGACGAACTGAGCGCGGCACTCGCTTTGCTCCAGA
GTTTCGACCCGCCGGGCGTGGGCGGGCGGTCGGCATCGGAATGTCTGAAGCTGCAATTGCTGCGGCTCGACGCATCGCCG
ACACGCACGCTCGCGCTCGAAATCGTCACGAATCACCTGGAATTGCTGGCCGCGCGCGACTTCACGCGCCTGCGCAAGCA
ACTGAAGGCGACGGACGACGCGCTGCGGGACGCGCATTTGCTGATCCGTTCGCTGGAGCCGTTTCCGGGCGCGGCATACG
GCAAGAGCGAAGCGGACTACGTCGTTCCGGACATTCTCGTGCGCAAGATGGCGAGCGGCTGGACGGCTGAGCTGAATCCG
GAGATCGTGCCGCGGCTGCGGATCAACCACTTGTACGCGAATATTTTGCGCAACAACCGTGGCGATCCCGGCAGCGGTTC
GCTGCGTCAACAGCTTCAGGAAGCACGCTGGCTGATCAAGAATATCCAGCAGCGTTTCGAGACGATTCTTCGCGTCGCAC
AGGCTATTGTCGAGCGTCAGAAGAACTTCTTTGCGCATGGCGAAATCGCCATGCGCCCCTTGGTTTTAAGGGAAATTGCT
GATACGCTGGGCTTACACGAATCGACAGTTTCTCGTGTGACCACAGGGAAGTACATGCTCACCCCATTCGGGACGCTTGA
ATTTAAGTACTTCTTTGGATCGCATGTTTCTACCGACACGGGAGGCGCGGCATCGTCCACGGCGATCCGGGCCCTCATCA
AGCAACTGATAGGAGCGGAAGACCCCAAGACTCCTCTTTCAGACAGCCGCATCGCCGAACTGCTGGCGGAACAGGGGTTC
GTGGTTGCCCGGCGCACGGTCGCCAAATACCGCGAAGCGCTCAAAATCCCCGCAGTGAATCTGCGCAAGTCTCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(142-332)

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.601

100

0.667