Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LDZ27_RS08405 Genome accession   NZ_CP084265
Coordinates   1786722..1788110 (-) Length   462 a.a.
NCBI ID   WP_244813664.1    Uniprot ID   -
Organism   Caballeronia sp. Lep1P3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1781722..1793110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDZ27_RS08385 - 1782661..1783152 (-) 492 WP_244813660.1 glutathione peroxidase -
  LDZ27_RS08390 - 1783307..1785253 (+) 1947 WP_244813661.1 ATP-binding cassette domain-containing protein -
  LDZ27_RS08395 - 1785275..1786306 (+) 1032 WP_244813662.1 CaiB/BaiF CoA-transferase family protein -
  LDZ27_RS08400 - 1786303..1786566 (-) 264 WP_244813663.1 DUF2866 domain-containing protein -
  LDZ27_RS08405 radA 1786722..1788110 (-) 1389 WP_244813664.1 DNA repair protein RadA Machinery gene
  LDZ27_RS08410 alr 1788162..1789232 (-) 1071 WP_244813665.1 alanine racemase -
  LDZ27_RS08415 lplT 1789523..1790830 (+) 1308 WP_244813666.1 lysophospholipid transporter LplT -
  LDZ27_RS08420 thiM 1790876..1791691 (+) 816 WP_244813667.1 hydroxyethylthiazole kinase -
  LDZ27_RS08425 thiE 1791704..1792351 (+) 648 WP_244813668.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48805.06 Da        Isoelectric Point: 6.5866

>NTDB_id=610376 LDZ27_RS08405 WP_244813664.1 1786722..1788110(-) (radA) [Caballeronia sp. Lep1P3]
MAKAAKGKALYICSECGAQSPKWTGQCASCGAWNTLVESVEQAPSAHRFQALAKNSPVQRLADIEASDVPRFTTGVGEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQSLAEIARERPALYISGEESGAQIALRAQRLGLLGGSASAAADLSLLAEIQL
EKIQATIDEQRPEVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRIAKQTGTSIIMVGHVTKEGSLAGPRVLEHIVDT
VLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVAGSCVLVTQEGSRPLLVEVQALVD
TAHVPNPRRLAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLITFGE
VGLAGEIRPSPRGQDRLKEAAKLGFSVALIPKANAPKQPVEGLEVIAVDRIEEAIDRVRDLE

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=610376 LDZ27_RS08405 WP_244813664.1 1786722..1788110(-) (radA) [Caballeronia sp. Lep1P3]
GTGGCGAAAGCAGCAAAGGGAAAAGCGCTCTATATCTGTAGCGAATGCGGCGCGCAATCGCCGAAGTGGACGGGGCAGTG
CGCGTCGTGCGGCGCGTGGAACACACTGGTGGAATCGGTGGAGCAGGCGCCCTCGGCGCATCGCTTTCAGGCGCTCGCGA
AGAACTCGCCGGTGCAGCGTCTCGCCGATATCGAAGCGTCGGACGTGCCGCGCTTCACCACCGGCGTTGGCGAATTCGAC
CGCGTGCTCGGCGGCGGTCTCGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCCACGTTGCT
CCTGCAATCGCTCGCGGAAATCGCGCGCGAGCGGCCAGCGCTCTATATCAGTGGAGAAGAATCCGGCGCGCAGATCGCGC
TGCGGGCGCAGCGGCTCGGACTGCTCGGCGGTTCGGCGAGCGCGGCGGCCGATCTTTCGCTGCTCGCGGAAATCCAGCTC
GAAAAGATTCAGGCGACGATCGACGAGCAACGTCCGGAAGTCGCCGTCATCGATTCCATCCAGACGATTTACTCCGAAGC
GCTCACGTCCGCGCCGGGTTCCGTCGCGCAGGTCCGCGAATGCGCGGCGCAACTGACGCGCATCGCCAAGCAGACGGGCA
CCTCGATCATCATGGTCGGCCATGTGACGAAGGAAGGCAGTCTCGCGGGACCGCGCGTGCTGGAGCATATCGTCGATACC
GTGCTGTACTTCGAAGGCGACACGCACTCGTCTTTCCGCCTCGTGCGCGCATTCAAGAACCGCTTCGGCGCGGTGAACGA
ACTCGGCGTCTTCGCGATGACGGAGAAGGGCTTGCGCGGCGTGGCGAATCCTTCGGCGCTTTTTCTGTCGCAGCACGAGC
AGAGCGTCGCGGGATCGTGCGTGCTCGTCACGCAGGAAGGCTCGCGGCCGCTGCTCGTGGAAGTGCAGGCGCTCGTCGAT
ACCGCGCATGTGCCGAATCCCCGGCGACTCGCGGTGGGCCTCGAACAGAACCGGCTCGCGCTGCTGCTCGCGGTGCTGCA
TCGGCATGCGGGCATCGCGTGTTTCGATCAGGACGTGTTCCTGAACGCCGTCGGCGGCGTGAAGATAACCGAGCCTGCCG
CCGACCTCGCGGTGCTGCTCGCGATTCACTCGTCGATGCGCAACAAGCCGCTGCCCAAAGGCCTCATCACGTTCGGCGAA
GTCGGGCTTGCCGGTGAGATCCGTCCTTCGCCGCGCGGGCAGGATCGTCTGAAGGAGGCAGCCAAGCTGGGCTTTTCGGT
GGCGTTGATTCCGAAGGCCAACGCGCCGAAGCAGCCTGTCGAAGGCCTCGAGGTGATTGCGGTCGACCGCATCGAGGAAG
CGATCGATCGCGTGCGTGATCTCGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.41

99.784

0.513
  radA Streptococcus mitis SK321

47.046

98.918

0.465
  radA Streptococcus pneumoniae Rx1

46.739

99.567

0.465
  radA Streptococcus pneumoniae D39

46.739

99.567

0.465
  radA Streptococcus pneumoniae R6

46.739

99.567

0.465
  radA Streptococcus pneumoniae TIGR4

46.739

99.567

0.465
  radA Streptococcus mitis NCTC 12261

46.711

98.701

0.461