Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LDZ26_RS05290 Genome accession   NZ_CP084260
Coordinates   1122498..1123886 (+) Length   462 a.a.
NCBI ID   WP_175940113.1    Uniprot ID   -
Organism   Caballeronia sp. SL2Y3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1117498..1128886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDZ26_RS05270 thiE 1118245..1118892 (-) 648 WP_244848964.1 thiamine phosphate synthase -
  LDZ26_RS05275 thiM 1118895..1119710 (-) 816 WP_244848483.1 hydroxyethylthiazole kinase -
  LDZ26_RS05280 lplT 1119775..1121082 (-) 1308 WP_244848484.1 lysophospholipid transporter LplT -
  LDZ26_RS05285 alr 1121385..1122455 (+) 1071 WP_244848485.1 alanine racemase -
  LDZ26_RS05290 radA 1122498..1123886 (+) 1389 WP_175940113.1 DNA repair protein RadA Machinery gene
  LDZ26_RS05295 - 1124045..1124308 (+) 264 WP_241269851.1 DUF2866 domain-containing protein -
  LDZ26_RS05300 - 1124305..1125336 (-) 1032 WP_244848486.1 CaiB/BaiF CoA-transferase family protein -
  LDZ26_RS05305 - 1125358..1127304 (-) 1947 WP_244848487.1 ATP-binding cassette domain-containing protein -
  LDZ26_RS05310 - 1127475..1127966 (+) 492 WP_244848488.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48656.99 Da        Isoelectric Point: 6.9499

>NTDB_id=610359 LDZ26_RS05290 WP_175940113.1 1122498..1123886(+) (radA) [Caballeronia sp. SL2Y3]
MAKAAKAKTLYICSECGGQAPKWTGQCAACGAWNTLVESVEQAPSAHRFQALAKSSPVQRLADIEAADVPRFSTGVGEFD
RVLGGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIARERPSLYVSGEESGAQIALRAQRLGLLGGSASAAADLALLAEIQL
EKIQAAIDEQRPEVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQTGTAIIMVGHVTKEGSLAGPRVLEHIVDT
VLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVAGSCVLVTQEGSRPLLVEVQALVD
TAHVPNPRRLAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLITFGE
VGLAGEIRPSPRGQDRLKEAAKLGFSVALIPKANAPKQAVDGLKVIAVDRIEEAIDRVRDLE

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=610359 LDZ26_RS05290 WP_175940113.1 1122498..1123886(+) (radA) [Caballeronia sp. SL2Y3]
GTGGCAAAAGCAGCGAAGGCAAAGACGCTTTACATCTGTAGCGAGTGCGGCGGACAAGCGCCGAAGTGGACCGGACAGTG
CGCGGCATGCGGAGCGTGGAACACGCTCGTGGAATCGGTGGAGCAGGCGCCGTCGGCGCATCGCTTCCAGGCGCTCGCGA
AAAGCTCGCCGGTGCAGCGGCTCGCCGACATCGAAGCGGCGGACGTGCCGCGCTTTTCGACCGGCGTCGGCGAGTTCGAC
CGTGTGCTCGGCGGCGGTCTCGTGCCGGGCGGCGTGGTGCTGATTGGCGGCGACCCGGGCATCGGCAAATCGACGCTCTT
GCTGCAATCGCTCGCCGAAATCGCGCGCGAGCGGCCGTCGCTCTACGTGAGCGGCGAGGAGTCCGGCGCGCAGATCGCGT
TGCGCGCGCAGCGGCTCGGCTTGCTCGGCGGCTCTGCGAGCGCGGCGGCGGACCTCGCGCTGCTCGCCGAAATCCAGCTA
GAAAAGATTCAGGCGGCCATCGACGAACAACGTCCGGAAGTCGCCGTCATCGATTCGATCCAGACCGTCTATTCCGAGGC
GCTGACCTCCGCGCCGGGTTCCGTCGCGCAGGTCCGCGAATGCGCGGCGCAACTGACGCGCATCGCCAAGCAGACGGGCA
CGGCCATCATCATGGTCGGCCACGTGACCAAGGAAGGCAGTCTCGCTGGGCCGCGCGTGTTGGAGCATATCGTCGATACG
GTGCTGTACTTCGAAGGCGACACGCATTCGTCCTTCCGGCTCGTGCGTGCGTTCAAGAACCGCTTCGGCGCGGTCAATGA
GCTCGGCGTCTTTGCGATGACGGAGAAAGGCTTGCGCGGCGTGGCGAATCCGTCGGCGCTTTTCTTGTCGCAGCATGAGC
AGAGCGTCGCGGGGTCGTGTGTCCTCGTGACGCAGGAAGGTTCGCGGCCGCTGCTCGTCGAAGTGCAGGCGCTCGTCGAT
ACGGCGCATGTGCCGAATCCGCGCCGCCTCGCGGTCGGGCTGGAGCAGAACCGGCTCGCGCTGCTGCTCGCGGTGCTGCA
TCGCCACGCGGGCATCGCGTGTTTCGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCACCGAACCCGCCG
CCGATCTGGCCGTGCTGCTCGCGATTCATTCGTCGATGCGCAACAAGCCTCTGCCGAAGGGCCTCATCACGTTCGGCGAA
GTAGGGCTGGCCGGCGAAATCCGGCCGTCGCCGCGCGGGCAGGATCGCCTGAAGGAAGCGGCCAAGCTCGGCTTCTCCGT
CGCGCTGATTCCGAAGGCCAATGCGCCGAAACAGGCGGTGGACGGTCTCAAGGTGATCGCGGTCGATCGGATCGAAGAAG
CCATCGACCGCGTGCGCGATCTCGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-38)

AAA domain (AAA_25)

(84-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.078

100

0.513
  radA Streptococcus pneumoniae Rx1

47.072

99.784

0.47
  radA Streptococcus pneumoniae D39

47.072

99.784

0.47
  radA Streptococcus pneumoniae TIGR4

47.072

99.784

0.47
  radA Streptococcus pneumoniae R6

47.072

99.784

0.47
  radA Streptococcus mitis SK321

46.97

100

0.47
  radA Streptococcus mitis NCTC 12261

46.855

99.784

0.468