Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LDZ26_RS01190 Genome accession   NZ_CP084260
Coordinates   237081..238598 (-) Length   505 a.a.
NCBI ID   WP_244847810.1    Uniprot ID   -
Organism   Caballeronia sp. SL2Y3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 232081..243598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDZ26_RS01165 - 232873..233523 (-) 651 WP_244847805.1 LON peptidase substrate-binding domain-containing protein -
  LDZ26_RS01170 rapZ 233558..234454 (-) 897 WP_244847806.1 RNase adapter RapZ -
  LDZ26_RS01175 hprK 234534..235502 (-) 969 WP_244847807.1 HPr(Ser) kinase/phosphatase -
  LDZ26_RS01180 ptsN 235696..236151 (-) 456 WP_244847809.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LDZ26_RS01185 hpf 236538..236897 (-) 360 WP_159835157.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LDZ26_RS01190 rpoN/rpoN1 237081..238598 (-) 1518 WP_244847810.1 RNA polymerase factor sigma-54 Machinery gene
  LDZ26_RS01195 lptB 238761..239543 (-) 783 WP_244847812.1 LPS export ABC transporter ATP-binding protein -
  LDZ26_RS01200 lptA 239540..240250 (-) 711 WP_244847813.1 lipopolysaccharide transport periplasmic protein LptA -
  LDZ26_RS01205 lptC 240280..240882 (-) 603 WP_244847815.1 LPS export ABC transporter periplasmic protein LptC -
  LDZ26_RS01210 - 240887..241423 (-) 537 WP_244847817.1 HAD family hydrolase -
  LDZ26_RS01215 kdsD 241423..242406 (-) 984 WP_175939340.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55374.33 Da        Isoelectric Point: 4.8740

>NTDB_id=610354 LDZ26_RS01190 WP_244847810.1 237081..238598(-) (rpoN/rpoN1) [Caballeronia sp. SL2Y3]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDDWIASPLRVAADGSLIATAGASSAAPEPM
MSNGSTSSSSSSERSESSEPQGVDEYNGLSSDGGTDSSNWNLEDYGRSSNASDDDDLPPLQIHESTTTLRDHLTAQLRMT
QANQRDRALITFLIESLDEDGYLTSSLEEIQADLPDELEVDVDELSAALALLQSFDPPGVGGRSASECLKLQLLRLDASP
TRTLALDIVTNHLELLAARDFTRLRKQLKASDDALRDAHVLIRSLEPFPGAAYGKSEADYVVPDILVRKSASGWTAELNP
EIVPRLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKTPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=610354 LDZ26_RS01190 WP_244847810.1 237081..238598(-) (rpoN/rpoN1) [Caballeronia sp. SL2Y3]
ATGAAAGCCAGCCTCCAACTTCGCCTATCGCAGCATCTTGCGCTCACCCCGCAACTGCAGCAGTCCATCCGGCTGCTGCA
GTTGTCGACGCTCGAACTGCAGCAGGAAGTGGCGATGGCCGTCGCGCAAAACCCGCTGCTGGAAAACGACGACGACTGGA
TCGCGAGCCCCCTTCGCGTGGCCGCAGACGGCTCGCTGATTGCCACGGCCGGCGCGAGCAGCGCCGCCCCCGAGCCGATG
ATGAGCAACGGCTCGACTTCCAGTTCGTCGAGCTCCGAACGATCGGAAAGCAGCGAGCCGCAGGGCGTCGATGAGTACAA
CGGCCTTTCATCCGACGGCGGCACGGATTCGAGCAACTGGAATTTGGAAGACTACGGCCGTTCGAGCAACGCCTCCGACG
ACGACGACCTCCCGCCGCTGCAAATCCACGAATCGACAACGACGCTGCGCGACCATCTCACCGCGCAACTGCGCATGACG
CAGGCGAACCAGCGCGACCGCGCGCTGATCACGTTTCTGATCGAATCGCTGGATGAGGACGGGTATCTCACGTCGTCGCT
GGAAGAAATTCAGGCAGATTTGCCGGACGAACTCGAAGTCGATGTCGACGAACTCAGCGCGGCATTAGCCTTGCTCCAGA
GTTTCGACCCGCCGGGTGTCGGCGGCCGGTCGGCGTCGGAGTGTCTGAAGCTGCAATTGCTGCGGCTCGATGCATCGCCC
ACGCGCACGCTCGCGCTCGATATCGTCACGAACCATCTGGAACTGCTCGCCGCGCGCGACTTCACGCGCTTGCGCAAGCA
ACTGAAGGCAAGCGACGACGCGCTGAGAGACGCGCATGTGCTGATCCGGTCGCTGGAGCCGTTTCCCGGCGCCGCATACG
GCAAGAGCGAAGCGGACTACGTGGTGCCGGACATTCTGGTGCGCAAATCCGCGAGCGGATGGACCGCGGAGCTGAACCCG
GAGATCGTGCCGCGGCTGCGGATCAACCATCTGTACGCGAACATTTTGCGCAACAACCGTGGCGATCCGGGCAGTGGTTC
GCTGCGTCAACAGCTTCAGGAAGCACGCTGGCTGATCAAGAATATCCAGCAGCGCTTCGAGACGATTCTTCGCGTCGCGC
AGGCAATTGTCGAGCGTCAGAAGAACTTTTTTGCGCATGGTGAAATCGCCATGCGGCCCTTGGTTTTGCGGGAGATTGCT
GATACGCTGGGTTTACACGAATCGACGGTTTCTCGTGTGACCACCGGGAAGTACATGCTCACCCCATTCGGGACGCTTGA
ATTTAAGTACTTCTTTGGATCGCACGTTTCCACCGACACGGGCGGCGCCGCATCCTCCACGGCGATCCGGGCCCTCATCA
AGCAACTGATAGGAGCGGAAGACCCGAAAACGCCTCTTTCAGACAGCCGCATCGCCGAACTGCTGGCGGAACAAGGCTTC
GTGGTCGCGCGGCGCACCGTCGCCAAATACCGCGAGGCGCTGAAAATCCCCGCAGTCAATCTGCGCAAGTCTCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(142-332)

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.194

100

0.673