Detailed information NTG0610353

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LDZ26_RS01080
• Genome accession: NZ_CP084260
• Coordinates: 219345..220577 (-)
• Length: 410 a.a.
• NCBI ID: WP_244847787.1
• Uniprot ID: -
• Organism: Caballeronia sp. SL2Y3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 214345..225577

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDZ26_RS01060	ybiB	216043..217014 (-)	972	WP_175939288.1	DNA-binding protein YbiB	-
LDZ26_RS01065	-	217312..218010 (+)	699	WP_175939290.1	fumarylacetoacetate hydrolase family protein	-
LDZ26_RS01070	maiA	218026..218670 (+)	645	WP_244847784.1	maleylacetoacetate isomerase	-
LDZ26_RS01075	-	218667..219299 (+)	633	WP_244847786.1	LysE/ArgO family amino acid transporter	-
LDZ26_RS01080	pilA	219345..220577 (-)	1233	WP_244847787.1	signal recognition particle-docking protein FtsY	Machinery gene
LDZ26_RS01085	rsmD	220785..221429 (+)	645	WP_244847788.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LDZ26_RS01090	coaD	221528..222034 (+)	507	WP_244847789.1	pantetheine-phosphate adenylyltransferase	-
LDZ26_RS01095	-	222059..222409 (-)	351	WP_244847791.1	winged helix-turn-helix domain-containing protein	-
LDZ26_RS01100	-	222502..223071 (+)	570	WP_244847792.1	hypothetical protein	-
LDZ26_RS01105	-	223085..223237 (-)	153	WP_244847794.1	hypothetical protein	-
LDZ26_RS01110	-	223511..223768 (+)	258	WP_159835144.1	YfhL family 4Fe-4S dicluster ferredoxin	-
LDZ26_RS01115	hisC	223772..224842 (-)	1071	WP_244847795.1	histidinol-phosphate transaminase	-
LDZ26_RS01120	pth	224863..225465 (-)	603	WP_244847796.1	aminoacyl-tRNA hydrolase	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 44106.29 Da
• Isoelectric Point: 4.4971

>NTDB_id=610353 LDZ26_RS01080 WP_244847787.1 219345..220577(-) (pilA) [Caballeronia sp. SL2Y3]
MFSFFKRFKKPADAPLDPSAENTPDAIEDEEASAPVIEAELEREPAVDAAIPAEAPPAEVEPEPPAQPAQAAANDQPAPY
WQGRTQSQWLRAPETDEASEEVLPPPEPDAAAKKSWLSRLRNGLSKTSSSLTGIFVGAKIDEDLYEELETALLMSDAGVD
ATEFLLESLREKVRAERLTEASQVKAALRELIVDLLRPLEKSLMLGRAQPLVMMIAGVNGVGKTTSIGKLAKHLQSFNQS
VLLAAGDTFRAAAREQLTVWGERNNVTVIAQESGDAAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVRRVI
AKAMPDAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFK
AEEFADALLG

Nucleotide

• Length: 1233 bp

>NTDB_id=610353 LDZ26_RS01080 WP_244847787.1 219345..220577(-) (pilA) [Caballeronia sp. SL2Y3]
ATGTTCAGCTTTTTCAAACGATTCAAAAAGCCGGCTGACGCGCCGCTCGACCCTTCCGCCGAGAACACGCCCGACGCCAT
CGAGGACGAAGAAGCGTCCGCTCCCGTGATCGAGGCGGAACTGGAACGCGAGCCCGCCGTCGACGCCGCCATTCCTGCCG
AAGCGCCGCCTGCCGAAGTCGAGCCTGAACCGCCCGCTCAGCCCGCTCAAGCTGCCGCGAACGATCAACCCGCACCGTAT
TGGCAGGGCCGCACGCAGTCCCAATGGCTGCGCGCGCCGGAGACCGACGAGGCGAGCGAAGAAGTGCTTCCGCCGCCCGA
GCCCGACGCCGCCGCGAAGAAGTCGTGGCTGTCGCGCCTGAGGAACGGACTCTCGAAGACGAGTTCGAGCCTGACCGGAA
TCTTCGTCGGCGCAAAGATCGACGAAGACCTGTACGAGGAACTCGAAACCGCGCTCTTGATGTCGGACGCGGGCGTCGAT
GCGACCGAATTCCTGCTCGAATCGCTGCGCGAGAAAGTGCGCGCCGAGCGGCTGACCGAAGCCTCGCAGGTGAAGGCGGC
GTTGCGCGAACTGATCGTCGATTTGCTGCGTCCGCTCGAAAAGTCGCTGATGCTCGGCCGCGCGCAGCCGCTGGTAATGA
TGATCGCGGGCGTGAACGGCGTCGGCAAGACGACGAGTATCGGCAAGCTGGCGAAGCACTTGCAGAGCTTCAATCAGTCG
GTGCTGCTCGCCGCCGGCGACACCTTCCGCGCCGCCGCCCGCGAACAGCTCACCGTCTGGGGCGAACGCAACAACGTGAC
GGTGATCGCGCAGGAAAGCGGCGACGCGGCCGCCGTCATCTTCGACGCCGTGGGCGCGGCGCGCGCCCGCAAGATCGACG
TGATGATGGCCGACACCGCCGGCCGCCTGCCGACGCAACTGCATCTGATGGAAGAGTTGCGCAAGGTGCGCCGCGTGATT
GCGAAGGCCATGCCGGATGCGCCTCACGAAGTGCTGCTCGTCATCGACGCGAACACGGGGCAAAACGCGCTGGCGCAAGT
GAAGGCGTTCGACGATGCGCTCGGCTTGACCGGCCTCATCGTGACCAAGCTGGACGGCACGGCGAAGGGCGGCATCCTCG
CCGCCATCGCGCGGCAGCGGCCGATTCCGGTGTACTTCATCGGCGTCGGCGAGAAGGTCGAGGACTTGCAGCCGTTCAAG
GCGGAAGAATTCGCCGACGCGTTGCTCGGTTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (211-410)

• SRP54-type protein, helical bundle domain (SRP54_N) (129-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.878	100	0.539