Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LDX55_RS04695 Genome accession   NZ_CP084249
Coordinates   1038603..1040402 (-) Length   599 a.a.
NCBI ID   WP_034534504.1    Uniprot ID   -
Organism   Apilactobacillus kunkeei strain IBH001     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033603..1045402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDX55_RS04665 (LDX55_04690) - 1033945..1034457 (-) 513 WP_034531812.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  LDX55_RS04670 (LDX55_04695) - 1034472..1035323 (-) 852 WP_057198128.1 methyltransferase domain-containing protein -
  LDX55_RS04675 (LDX55_04700) - 1035419..1036306 (-) 888 WP_034534498.1 RluA family pseudouridine synthase -
  LDX55_RS04680 (LDX55_04705) - 1036299..1037108 (-) 810 WP_034534499.1 NAD kinase -
  LDX55_RS04685 (LDX55_04710) - 1037111..1037743 (-) 633 WP_034534502.1 GTP pyrophosphokinase family protein -
  LDX55_RS04690 (LDX55_04715) - 1037923..1038564 (+) 642 WP_051592213.1 DsbA family protein -
  LDX55_RS04695 (LDX55_04720) pepF 1038603..1040402 (-) 1800 WP_034534504.1 oligoendopeptidase F Regulator
  LDX55_RS04700 (LDX55_04725) - 1040441..1041595 (-) 1155 WP_263500135.1 competence protein CoiA -
  LDX55_RS04705 (LDX55_04730) - 1041588..1042649 (-) 1062 WP_051961097.1 adaptor protein MecA -
  LDX55_RS04710 (LDX55_04735) - 1042710..1043471 (-) 762 WP_034531824.1 MBL fold metallo-hydrolase -
  LDX55_RS04715 (LDX55_04740) - 1043564..1044016 (+) 453 WP_034531825.1 hypothetical protein -
  LDX55_RS04720 (LDX55_04745) - 1044078..1044566 (+) 489 WP_034530918.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69081.08 Da        Isoelectric Point: 4.5727

>NTDB_id=610330 LDX55_RS04695 WP_034534504.1 1038603..1040402(-) (pepF) [Apilactobacillus kunkeei strain IBH001]
MSEVQQLPKRSEVPEKLTWDLTTIYKTDDDFEADFKECVKEVESVEKLKTDHFDAKTLLSDLKAIEKLERKVEKLYVYSS
LKSDADTSNSEYQSMNARCADLASKASSALAWFEPAVLNISEDNLKKMLVEESELADYTHYFDELFSQKDHILDAEHEKI
LSSLGNIFDTPSNVYGVMTNSDLKFPVVSDEDGNKVELSNGVYSKLLESTDRSVRKEAFQQLYTVYNQFKNTLASTLSGE
VKVHNFRASMRHFSSAKEAALSNNHIDEKVYQQLIDTVNKYLPLLHRYVKLRKKLLSLDEMHMYDLYTPLFGNSPISYNF
DEAKEESIKALSILGDDYIDHIKEEFNNRWIDVVENKGKRSGAYSSGVYDTNPYILLNWQDNLDNLFTLVHESGHSMHSY
YTTHNQPFQYGDYSIFLAEIASTTNENILTDYLLKNTDDVEVKKYVLNHFLDGFKGTIFRQTQFAEFEDFAHQQEQAGNP
LTAKMLSDFYYKLNQRYYGDGVVSDPEIAYEWARIPHFYMNYYVYQYATGFAAAIDLSDGICDNDQEAIDKYIGYLKSGS
SDYPLNVMKKAGIDMTNADYLENAFKVFEERLNELESLI

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=610330 LDX55_RS04695 WP_034534504.1 1038603..1040402(-) (pepF) [Apilactobacillus kunkeei strain IBH001]
ATGAGTGAAGTACAACAATTACCAAAGAGATCAGAAGTACCAGAAAAATTAACCTGGGACTTAACAACTATTTATAAGAC
AGATGATGACTTTGAAGCGGATTTCAAAGAATGCGTCAAGGAAGTCGAATCCGTGGAAAAGTTAAAGACTGATCATTTTG
ATGCAAAAACACTTTTAAGTGATTTAAAAGCAATCGAAAAACTAGAACGTAAAGTGGAAAAATTATATGTATACTCATCA
TTGAAGAGTGATGCTGATACATCAAATTCTGAATACCAAAGCATGAATGCTAGATGTGCTGATTTAGCATCTAAAGCATC
ATCAGCACTAGCATGGTTTGAACCAGCGGTTTTAAATATTAGTGAAGATAACCTAAAGAAGATGCTAGTTGAAGAATCAG
AATTAGCAGATTACACACACTATTTTGATGAACTATTCAGCCAAAAGGACCATATCCTGGATGCTGAACATGAAAAAATT
CTATCAAGTTTAGGTAACATCTTTGATACCCCTTCAAACGTATACGGTGTAATGACCAATTCCGACTTGAAGTTCCCAGT
GGTATCAGACGAAGATGGTAACAAGGTCGAACTATCAAATGGTGTCTACAGTAAGTTACTTGAATCCACAGACAGAAGTG
TTCGTAAGGAAGCATTCCAACAGTTATACACAGTTTATAACCAATTCAAGAACACATTAGCATCAACACTTTCTGGTGAA
GTGAAGGTGCATAACTTTAGAGCTTCAATGCGTCACTTTAGCTCAGCTAAGGAAGCTGCATTGAGCAATAACCACATCGA
TGAAAAGGTATACCAACAACTAATTGATACGGTTAATAAGTACCTACCTTTATTACATCGTTACGTGAAACTAAGAAAGA
AATTACTTTCATTAGACGAAATGCACATGTATGACTTGTACACACCATTATTCGGTAACTCACCAATCTCATACAATTTT
GATGAAGCCAAGGAAGAATCAATCAAGGCGTTATCAATTCTTGGGGATGATTACATTGATCATATCAAGGAAGAATTTAA
CAATCGTTGGATTGATGTAGTTGAAAATAAGGGAAAGAGAAGTGGGGCATACTCATCAGGAGTATACGACACTAACCCAT
ATATCCTTTTAAACTGGCAAGATAACCTTGATAACTTGTTTACACTGGTTCATGAATCAGGTCACAGTATGCACAGTTAC
TACACAACCCATAATCAACCATTCCAATATGGTGATTACTCAATCTTCTTAGCCGAAATCGCATCAACCACTAACGAAAA
TATCTTAACAGATTATCTTTTGAAGAATACCGATGATGTTGAAGTTAAGAAGTACGTATTAAATCACTTCCTAGATGGTT
TCAAGGGAACTATTTTCAGACAAACTCAATTTGCTGAATTTGAAGACTTTGCTCACCAACAAGAACAAGCTGGTAATCCA
CTAACAGCTAAGATGTTAAGTGATTTCTACTACAAGCTAAACCAACGCTATTATGGTGATGGAGTAGTATCTGATCCAGA
AATTGCATATGAATGGGCTAGAATTCCGCATTTCTACATGAATTACTATGTATATCAATACGCAACAGGTTTTGCAGCCG
CCATTGATTTATCAGATGGCATCTGTGACAACGACCAAGAAGCAATTGATAAGTACATCGGTTACTTAAAATCAGGTAGT
TCTGATTATCCATTAAACGTAATGAAAAAAGCTGGTATTGACATGACTAATGCAGATTACCTAGAAAATGCATTCAAGGT
CTTTGAAGAAAGATTAAACGAATTAGAATCATTAATTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-185)

Peptidase family M3 (Peptidase_M3)

(206-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.269

98.664

0.506