Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LDX55_RS01775 Genome accession   NZ_CP084249
Coordinates   461012..462388 (+) Length   458 a.a.
NCBI ID   WP_094750867.1    Uniprot ID   -
Organism   Apilactobacillus kunkeei strain IBH001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 456012..467388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDX55_RS01750 (LDX55_01760) - 456405..457358 (+) 954 WP_034531882.1 DMT family transporter -
  LDX55_RS01755 (LDX55_01765) - 457373..458041 (+) 669 WP_248601084.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  LDX55_RS01760 (LDX55_01770) - 458078..459418 (-) 1341 WP_041152505.1 aminopeptidase C -
  LDX55_RS01765 (LDX55_01775) rpiA 459525..460214 (-) 690 WP_041152506.1 ribose-5-phosphate isomerase RpiA -
  LDX55_RS01770 (LDX55_01780) - 460448..460984 (+) 537 WP_198178022.1 dUTP diphosphatase -
  LDX55_RS01775 (LDX55_01785) radA 461012..462388 (+) 1377 WP_094750867.1 DNA repair protein RadA Machinery gene
  LDX55_RS01780 (LDX55_01790) - 462410..463501 (+) 1092 WP_052471476.1 PIN/TRAM domain-containing protein -
  LDX55_RS01785 (LDX55_01795) gltX 463611..465101 (+) 1491 WP_301637797.1 glutamate--tRNA ligase -
  LDX55_RS01790 (LDX55_01800) cysS 465222..466628 (+) 1407 WP_057197551.1 cysteine--tRNA ligase -
  LDX55_RS01795 (LDX55_01805) - 466629..467051 (+) 423 WP_034534704.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49683.83 Da        Isoelectric Point: 6.1927

>NTDB_id=610318 LDX55_RS01775 WP_094750867.1 461012..462388(+) (radA) [Apilactobacillus kunkeei strain IBH001]
MAKVKTQFVCEECGYISPKYLGHCPNCGKWNTFEEQTVQKETSSLKSTHRMDFNGQQTKPQLIKDVKFEKESRFETESQE
FNRVLGGGIVPGSLILIGGDPGIGKSTLLLQISGQLGAKDQRVLYVSGEESASQIKLRAERLSVNGSNMYLYPETDMGAI
KSAIDEIKPDAVVIDSVQTISEPEVDSAIGSVSQVRAITADLMSIAKTNGITIFVVGHVTKGGSIAGPKTLEHMVDTVLY
FEGDMHHSYRILRAVKNRFGSTDELGIFDMQESGLSEVANPSEVFLEERLKDANGSAIVVSIEGTRPILVEIQALVTPSV
FGNAQRTATGIDRNRVAVLMAVLEKRAGLMLQNQDAFLKAAGGVKLNEPAIDLAVAISVASSYKNRGTDPSECYIGEIGL
TGEIRRVNRIEQRVLEAQKLGFKRVLIPKHNMSGWTAPDGIEVVGVSTLAQAIKIALN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=610318 LDX55_RS01775 WP_094750867.1 461012..462388(+) (radA) [Apilactobacillus kunkeei strain IBH001]
GTGGCTAAAGTAAAGACCCAATTTGTTTGCGAAGAATGTGGATACATTTCACCAAAGTACTTGGGACATTGTCCTAACTG
TGGAAAATGGAACACGTTTGAAGAACAAACCGTTCAAAAAGAAACATCGAGTTTGAAATCGACTCACCGAATGGATTTCA
ATGGTCAGCAAACAAAACCACAACTAATCAAAGACGTTAAGTTCGAAAAGGAATCACGTTTTGAAACTGAATCCCAAGAA
TTTAATCGTGTATTAGGTGGCGGAATTGTTCCGGGCTCATTAATTTTAATTGGTGGTGATCCTGGTATCGGGAAATCCAC
ACTGTTACTTCAAATTTCTGGTCAATTAGGTGCTAAGGACCAACGTGTCCTATATGTATCTGGGGAAGAAAGTGCCAGTC
AAATTAAGCTAAGAGCGGAACGTTTATCCGTGAATGGCTCCAATATGTATCTATATCCAGAAACCGATATGGGTGCCATC
AAGTCTGCCATTGATGAGATTAAACCAGATGCAGTGGTAATTGACTCCGTTCAGACTATTTCTGAACCAGAAGTTGATTC
TGCAATTGGTTCCGTATCACAGGTAAGAGCAATTACCGCTGATTTAATGTCCATTGCAAAGACCAATGGAATTACTATCT
TTGTGGTTGGCCACGTTACCAAGGGTGGTTCAATTGCTGGACCTAAGACTTTGGAACACATGGTTGATACTGTTTTATAC
TTTGAAGGAGATATGCATCATTCCTACCGTATCTTAAGAGCCGTGAAGAACCGTTTTGGTTCAACCGACGAGCTAGGGAT
TTTTGATATGCAAGAATCCGGATTAAGTGAAGTTGCTAATCCATCAGAGGTCTTCTTGGAAGAACGTTTGAAGGACGCTA
ATGGTTCTGCAATCGTTGTTTCAATCGAGGGAACTAGACCAATCCTAGTTGAAATTCAGGCACTGGTAACACCATCCGTA
TTTGGGAACGCCCAAAGAACAGCTACCGGGATTGACCGTAACCGTGTAGCCGTTTTAATGGCGGTGCTTGAAAAACGTGC
AGGACTAATGCTACAAAATCAAGACGCCTTCTTAAAGGCTGCTGGTGGAGTTAAGTTAAACGAACCGGCAATTGATTTGG
CTGTGGCAATTAGTGTGGCATCAAGTTACAAGAACAGGGGAACAGACCCTAGTGAATGTTACATCGGTGAAATTGGGTTA
ACTGGTGAAATTAGACGAGTTAACCGTATTGAACAACGTGTTTTAGAAGCACAAAAACTGGGCTTTAAGCGCGTATTAAT
ACCAAAACATAATATGTCAGGATGGACTGCTCCAGACGGAATTGAAGTCGTTGGTGTATCCACACTGGCTCAAGCGATAA
AAATCGCACTTAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(71-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

63.216

99.127

0.627
  radA Streptococcus pneumoniae Rx1

63.216

99.127

0.627
  radA Streptococcus pneumoniae D39

63.216

99.127

0.627
  radA Streptococcus pneumoniae R6

63.216

99.127

0.627
  radA Streptococcus pneumoniae TIGR4

63.216

99.127

0.627
  radA Streptococcus mitis SK321

63.216

99.127

0.627
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

99.782

0.616