Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RES5_RS10585 Genome accession   NZ_CP084235
Coordinates   2153233..2154597 (-) Length   454 a.a.
NCBI ID   WP_011276735.1    Uniprot ID   A0A2A1KAD2
Organism   Staphylococcus haemolyticus strain SE2.14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2148233..2159597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RES5_RS10570 (RES5_010570) cysE 2149156..2149785 (-) 630 WP_176743849.1 serine O-acetyltransferase -
  RES5_RS10575 (RES5_010575) gltX 2150241..2151695 (-) 1455 WP_161510992.1 glutamate--tRNA ligase -
  RES5_RS10580 (RES5_010580) - 2152140..2153207 (-) 1068 WP_053027024.1 PIN/TRAM domain-containing protein -
  RES5_RS10585 (RES5_010585) radA 2153233..2154597 (-) 1365 WP_011276735.1 DNA repair protein RadA Machinery gene
  RES5_RS10590 (RES5_010590) - 2154820..2157294 (-) 2475 WP_037552093.1 ATP-dependent Clp protease ATP-binding subunit -
  RES5_RS10595 (RES5_010595) - 2157310..2158317 (-) 1008 WP_161510993.1 protein arginine kinase -
  RES5_RS10600 (RES5_010600) - 2158310..2158873 (-) 564 WP_011276738.1 UvrB/UvrC motif-containing protein -
  RES5_RS10605 (RES5_010605) - 2158896..2159357 (-) 462 WP_037552095.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49851.15 Da        Isoelectric Point: 7.0044

>NTDB_id=610244 RES5_RS10585 WP_011276735.1 2153233..2154597(-) (radA) [Staphylococcus haemolyticus strain SE2.14]
MAKKKVIFECMACGYQSPKWMGKCPNCGSWNQMEEIVEKASNPKHGVKTSTSSAKVQKLNDIKNEVTPRVQTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLDEDSSNLNVLAETDLEVIHQTVQ
QAQPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVHNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFERVIIPQTNIGGWQFPEGIKVVGVSTVHDALKYAFKS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=610244 RES5_RS10585 WP_011276735.1 2153233..2154597(-) (radA) [Staphylococcus haemolyticus strain SE2.14]
TTGGCCAAAAAGAAAGTAATTTTTGAGTGTATGGCTTGCGGCTATCAATCTCCAAAATGGATGGGAAAGTGTCCTAATTG
TGGGTCATGGAATCAAATGGAGGAAATTGTTGAAAAAGCTTCAAATCCTAAACACGGCGTAAAGACATCAACGTCTAGCG
CAAAAGTCCAGAAATTAAATGATATCAAGAATGAAGTAACACCGAGAGTTCAGACAGAATCAAAAGAGTTCAACCGCGTT
TTAGGTGGTGGCATTGTGAGTGGTTCTTTAGTGTTAATAGGTGGAGATCCTGGTATCGGTAAATCAACGTTATTACTGCA
AATTTGTGCATCATTGTCACAAAAATTAAATGTACTGTATATTACAGGTGAAGAATCACTAAATCAAACTAAATTACGCG
CCGATCGACTAGATGAAGATTCGAGTAATTTAAATGTGTTAGCAGAAACAGATTTAGAGGTAATACATCAAACAGTTCAA
CAAGCACAACCTGATATTTTAGTTGTGGATTCCATTCAAACAATATATCATCCTGAAATTAGTTCGGCACCTGGTTCTGT
GTCTCAAGTTAGAGAAAGTACACAGAGTTTAATGAATATTGCTAAACAAATGAATATTGCAACATTTATCGTCGGACATG
TTACAAAAGAAGGTCAAATTGCAGGACCGCGTCTATTAGAACATATGGTTGATACTGTACTGTACTTTGAGGGAGATGAG
CATCATGCTTATCGTATCTTGAGAGCGGTTAAGAACCGTTTTGGTTCTACTAATGAAATGGGCATTTTTGAGATGAAACA
AAGCGGGTTAAAAGGCGTTCATAATCCTTCTGAAATGTTCTTAGAGGAACGTTCTACCAATGTGCCGGGATCAACGATTG
TAGCAACTATGGAAGGTACACGACCTCTATTAATAGAAGTTCAGGCCTTAGTGACGCCTACAACATTTAATAACCCTAGA
CGTATGGCAACAGGTATAGATCATAATCGTTTGAGTTTATTAATGGCTGTATTAGAGAAAAAAGAAAACTATTTATTACA
ACAACAAGATGCATATATTAAAGTAGCTGGTGGCGTTCGATTGACAGAGCCGGCAGTTGATTTAAGTGTTATAGTAGCAA
CAGCTTCAAGTTTTAAAGATAAAGCAGTAGATGGGCTTGATTGTTATATTGGAGAAGTAGGTTTGACCGGTGAAGTGAGA
CGTGTTTCTCGAATTGAACAACGTGTTCAAGAAGCAGCTAAATTAGGCTTTGAACGTGTTATTATTCCACAGACAAATAT
CGGTGGATGGCAATTTCCTGAGGGCATTAAAGTAGTAGGAGTGTCTACAGTACATGATGCACTAAAATATGCATTCAAAT
CGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-218)

Subunit ChlI of Mg-chelatase (ChlI)

(359-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1KAD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.427

100

0.659
  radA Streptococcus pneumoniae Rx1

60.177

99.559

0.599
  radA Streptococcus pneumoniae D39

60.177

99.559

0.599
  radA Streptococcus pneumoniae R6

60.177

99.559

0.599
  radA Streptococcus pneumoniae TIGR4

60.177

99.559

0.599
  radA Streptococcus mitis NCTC 12261

60.177

99.559

0.599
  radA Streptococcus mitis SK321

60.177

99.559

0.599