Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NMK58_RS29645 Genome accession   NZ_CP101292
Coordinates   5779518..5780510 (-) Length   330 a.a.
NCBI ID   WP_077696695.1    Uniprot ID   -
Organism   Escherichia coli strain 2003-3014     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5774518..5785510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMK58_RS29635 (NMK58_29635) yieP 5777410..5778102 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  NMK58_RS29640 (NMK58_29640) mdtD 5778125..5779552 (+) 1428 WP_001280840.1 multidrug transporter subunit MdtD -
  NMK58_RS29645 (NMK58_29645) cytR 5779518..5780510 (-) 993 WP_077696695.1 ribose operon transcriptional repressor RbsR Regulator
  NMK58_RS29650 (NMK58_29650) rbsK 5780514..5781443 (-) 930 WP_001300603.1 ribokinase -
  NMK58_RS29655 (NMK58_29655) rbsB 5781569..5782459 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  NMK58_RS29660 (NMK58_29660) rbsC 5782484..5783449 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  NMK58_RS29665 (NMK58_29665) rbsA 5783454..5784959 (-) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  NMK58_RS29670 (NMK58_29670) rbsD 5784967..5785386 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36641.99 Da        Isoelectric Point: 5.2141

>NTDB_id=610160 NMK58_RS29645 WP_077696695.1 5779518..5780510(-) (cytR) [Escherichia coli strain 2003-3014]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMMPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=610160 NMK58_RS29645 WP_077696695.1 5779518..5780510(-) (cytR) [Escherichia coli strain 2003-3014]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGAGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGATGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364