Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LCH33_RS08110 Genome accession   NZ_CP084212
Coordinates   1784793..1785470 (+) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas amygdali strain 35-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1779793..1790470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH33_RS08090 (LCH33_001607) - 1779834..1780457 (+) 624 WP_004657835.1 glutathione S-transferase -
  LCH33_RS08095 (LCH33_001608) - 1780641..1781573 (+) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  LCH33_RS08100 (LCH33_001609) - 1781570..1782358 (+) 789 WP_002552673.1 ABC transporter permease -
  LCH33_RS08105 (LCH33_001610) comA 1782495..1784711 (+) 2217 WP_057404745.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LCH33_RS08110 (LCH33_001611) exbB 1784793..1785470 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LCH33_RS08115 (LCH33_001612) - 1785467..1785898 (+) 432 WP_002552677.1 biopolymer transporter ExbD -
  LCH33_RS08120 (LCH33_001613) lpxK 1785898..1786893 (+) 996 WP_057404746.1 tetraacyldisaccharide 4'-kinase -
  LCH33_RS08125 (LCH33_001614) - 1786911..1787096 (+) 186 WP_002552679.1 Trm112 family protein -
  LCH33_RS08130 (LCH33_001615) kdsB 1787093..1787857 (+) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LCH33_RS08135 (LCH33_001616) murB 1787892..1788911 (+) 1020 WP_057405088.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=610116 LCH33_RS08110 WP_002552676.1 1784793..1785470(+) (exbB) [Pseudomonas amygdali strain 35-1]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=610116 LCH33_RS08110 WP_002552676.1 1784793..1785470(+) (exbB) [Pseudomonas amygdali strain 35-1]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTACTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCG
TCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTTCTGCAAAGTCGCGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738