Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NMT99_RS20850 Genome accession   NZ_CP101290
Coordinates   4033739..4034533 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain LjM2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4028739..4039533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS20825 - 4029852..4030535 (-) 684 WP_038428106.1 response regulator transcription factor -
  NMT99_RS20830 - 4030747..4031646 (+) 900 WP_003226945.1 PepSY domain-containing protein -
  NMT99_RS20835 - 4031808..4032308 (+) 501 WP_003226943.1 PepSY domain-containing protein -
  NMT99_RS20840 - 4032305..4032434 (-) 130 Protein_4059 hypothetical protein -
  NMT99_RS20845 htrA 4032455..4033657 (-) 1203 WP_015250812.1 serine protease HtrC Regulator
  NMT99_RS20850 vicX 4033739..4034533 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  NMT99_RS20855 walI 4034555..4035397 (-) 843 WP_029318542.1 WalRK two-component regulatory system regulator WalI -
  NMT99_RS20860 walH 4035384..4036751 (-) 1368 WP_029318541.1 WalRK two-component regulatory system regulator WalH -
  NMT99_RS20865 walK 4036741..4038576 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  NMT99_RS20870 walR 4038584..4039291 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=610077 NMT99_RS20850 WP_003226939.1 4033739..4034533(-) (vicX) [Bacillus subtilis strain LjM2]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=610077 NMT99_RS20850 WP_003226939.1 4033739..4034533(-) (vicX) [Bacillus subtilis strain LjM2]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGTGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTACAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53