Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LDB15_RS17820 Genome accession   NZ_CP084207
Coordinates   3666593..3667222 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC2648-R1-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3661593..3672222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB15_RS17805 (LDB15_17810) helD 3661835..3663889 (-) 2055 WP_001295354.1 DNA helicase IV -
  LDB15_RS17810 (LDB15_17815) yccF 3664012..3664458 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LDB15_RS17815 (LDB15_17820) yccS 3664468..3666630 (+) 2163 WP_000875061.1 YccS family putative transporter -
  LDB15_RS17820 (LDB15_17825) sxy/tfoX 3666593..3667222 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LDB15_RS17825 (LDB15_17830) sulA 3667441..3667950 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LDB15_RS17830 (LDB15_17835) ompA 3668307..3669347 (+) 1041 WP_000750416.1 porin OmpA -
  LDB15_RS17835 (LDB15_17840) matP 3669423..3669875 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LDB15_RS17840 (LDB15_17845) ycbZ 3670061..3671821 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=610074 LDB15_RS17820 WP_000839153.1 3666593..3667222(-) (sxy/tfoX) [Escherichia coli strain EC2648-R1-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=610074 LDB15_RS17820 WP_000839153.1 3666593..3667222(-) (sxy/tfoX) [Escherichia coli strain EC2648-R1-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1