Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NMT99_RS18915 Genome accession   NZ_CP101290
Coordinates   3652356..3653489 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain LjM2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3647356..3658489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS18875 ywnA 3647518..3647919 (-) 402 WP_029318719.1 Rrf2 family transcriptional regulator -
  NMT99_RS18880 ureC 3648054..3649763 (-) 1710 WP_069703623.1 urease subunit alpha -
  NMT99_RS18885 ureB 3649760..3650134 (-) 375 WP_003227726.1 urease subunit beta -
  NMT99_RS18890 ureA 3650131..3650448 (-) 318 WP_003227724.1 urease subunit gamma -
  NMT99_RS18895 - 3650639..3650799 (-) 161 Protein_3669 hypothetical protein -
  NMT99_RS21210 - 3651035..3651247 (-) 213 Protein_3670 urea ABC transporter substrate-binding protein -
  NMT99_RS18905 csbD 3651460..3651648 (-) 189 WP_015251021.1 stress response protein CsbD -
  NMT99_RS18910 - 3651721..3652200 (-) 480 WP_003244390.1 hypothetical protein -
  NMT99_RS18915 rapC 3652356..3653489 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  NMT99_RS18920 moaA 3653681..3654706 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  NMT99_RS18925 fdhD 3654722..3655510 (-) 789 WP_015714864.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  NMT99_RS18930 - 3655756..3655917 (-) 162 WP_003227706.1 hypothetical protein -
  NMT99_RS18935 ywmD 3656012..3656686 (-) 675 WP_029726055.1 VWA domain-containing protein -
  NMT99_RS18940 - 3656739..3656879 (-) 141 WP_003227702.1 hypothetical protein -
  NMT99_RS18945 ywmC 3657010..3657693 (-) 684 WP_024571497.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=610067 NMT99_RS18915 WP_003227715.1 3652356..3653489(-) (rapC) [Bacillus subtilis strain LjM2]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=610067 NMT99_RS18915 WP_003227715.1 3652356..3653489(-) (rapC) [Bacillus subtilis strain LjM2]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGTGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424