Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NMT99_RS13015 Genome accession   NZ_CP101290
Coordinates   2519010..2520137 (+) Length   375 a.a.
NCBI ID   WP_004398842.1    Uniprot ID   P45943
Organism   Bacillus subtilis strain LjM2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2514010..2525137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS12985 - 2514599..2514777 (-) 179 Protein_2512 hypothetical protein -
  NMT99_RS12990 arsC 2515132..2515551 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  NMT99_RS12995 acr3 2515563..2516603 (-) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  NMT99_RS13000 arsK 2516626..2517066 (-) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  NMT99_RS13005 arsR 2517114..2517431 (-) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  NMT99_RS13010 yqcI 2517803..2518567 (-) 765 WP_017696291.1 YqcI/YcgG family protein -
  NMT99_RS13015 rapC 2519010..2520137 (+) 1128 WP_004398842.1 response regulator aspartate phosphatase RapE Regulator
  NMT99_RS13020 phrE 2520127..2520261 (+) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  NMT99_RS13025 - 2520371..2520530 (+) 160 Protein_2520 hypothetical protein -
  NMT99_RS13030 - 2520899..2522752 (+) 1854 WP_017696293.1 T7SS effector LXG polymorphic toxin -
  NMT99_RS13035 - 2522764..2523216 (+) 453 WP_017696294.1 SMI1/KNR4 family protein -
  NMT99_RS13040 cdiI 2523313..2523672 (+) 360 WP_017696295.1 ribonuclease toxin immunity protein CdiI -
  NMT99_RS13045 yqcF 2524021..2524599 (+) 579 WP_017697458.1 type VII secretion system immunity protein YqcF -
  NMT99_RS13050 - 2524717..2524863 (+) 147 WP_009967791.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44636.38 Da        Isoelectric Point: 7.3392

>NTDB_id=610030 NMT99_RS13015 WP_004398842.1 2519010..2520137(+) (rapC) [Bacillus subtilis strain LjM2]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
NKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTRAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=610030 NMT99_RS13015 WP_004398842.1 2519010..2520137(+) (rapC) [Bacillus subtilis strain LjM2]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTAACTGA
TGCTGAAATGTTAAAAGCTGAAATAGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGCCATAAAATTATGTTGGAATACACGCTGCCATCTGATGAAAACCGAATGGAACTTTCAGAATATTTA
AATAAAATTGAGGGCCATAAGAAAAAATTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAGAGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATACAACATTTATAAGAAACACGAGCTTTACTCTGTTCGTCGTATTCAGTGCCATTTTGTCATTGCCGGTAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCACATCTATGCCACTGCATTTTTCAATCTCGGCAACTGCTATCACAAAATGGACAACTTAAATAAGGCTGCACGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATAAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAGGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTTTTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTCCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(184-246)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P45943

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384