Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NMT99_RS03765 Genome accession   NZ_CP101290
Coordinates   730331..731461 (+) Length   376 a.a.
NCBI ID   WP_069703758.1    Uniprot ID   -
Organism   Bacillus subtilis strain LjM2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 725331..736461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS03740 - 725417..725668 (-) 252 WP_069703754.1 bacteriocin immunity protein -
  NMT99_RS03745 - 725911..726381 (-) 471 WP_069703775.1 antitoxin YezG family protein -
  NMT99_RS03750 - 726442..726921 (-) 480 WP_069703755.1 antitoxin YezG family protein -
  NMT99_RS03755 yeeF 726926..728935 (-) 2010 WP_069703756.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  NMT99_RS03760 - 729147..730169 (+) 1023 WP_069703757.1 hypothetical protein -
  NMT99_RS03765 rapC 730331..731461 (+) 1131 WP_069703758.1 response regulator aspartate phosphatase RapH Regulator
  NMT99_RS03770 phrH 731451..731630 (+) 180 WP_038428551.1 phosphatase RapH inhibitor PhrH -
  NMT99_RS03775 yeeI 731790..732509 (+) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NMT99_RS03780 yeeK 732643..733059 (+) 417 WP_038427497.1 spore coat protein YeeK -
  NMT99_RS03785 yezE 733173..733757 (+) 585 WP_038427498.1 TetR/AcrR family transcriptional regulator -
  NMT99_RS03790 yesE 733836..734279 (+) 444 WP_038427500.1 nuclear transport factor 2 family protein -
  NMT99_RS03795 yesF 734276..735124 (+) 849 WP_038427501.1 NAD-dependent epimerase/dehydratase family protein -
  NMT99_RS03800 cotJA 735271..735519 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  NMT99_RS03805 cotJB 735503..735766 (+) 264 WP_003219491.1 spore coat protein CotJB -
  NMT99_RS03810 cotJC 735781..736350 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44014.40 Da        Isoelectric Point: 5.8866

>NTDB_id=609955 NMT99_RS03765 WP_069703758.1 730331..731461(+) (rapC) [Bacillus subtilis strain LjM2]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLETALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLCWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=609955 NMT99_RS03765 WP_069703758.1 730331..731461(+) (rapC) [Bacillus subtilis strain LjM2]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTGGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGACGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTATGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

39.788

100

0.399