Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   NMT99_RS02415 Genome accession   NZ_CP101290
Coordinates   474276..474710 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain LjM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469276..479710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS02385 ydaD 469926..470786 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  NMT99_RS02390 lyxE 470802..471305 (+) 504 WP_021481729.1 D-lyxose ketol-isomerase -
  NMT99_RS02395 ydaF 471391..471942 (+) 552 WP_038427389.1 GNAT family N-acetyltransferase -
  NMT99_RS02400 ydaG 472020..472442 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  NMT99_RS02405 amj 472948..473757 (+) 810 WP_038427391.1 lipid II flippase Amj -
  NMT99_RS02410 ydzA 473801..474091 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  NMT99_RS02415 lrpC 474276..474710 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  NMT99_RS02420 topB 474775..476958 (+) 2184 WP_038427393.1 DNA topoisomerase III -
  NMT99_RS02425 ephJ 477161..478249 (+) 1089 WP_038427395.1 hypothetical protein -
  NMT99_RS02430 epsK 478230..479081 (+) 852 WP_033883717.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=609950 NMT99_RS02415 WP_003246585.1 474276..474710(+) (lrpC) [Bacillus subtilis strain LjM2]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=609950 NMT99_RS02415 WP_003246585.1 474276..474710(+) (lrpC) [Bacillus subtilis strain LjM2]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCACCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1