Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   NMT99_RS00330 Genome accession   NZ_CP101290
Coordinates   59637..59867 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain LjM2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54637..64867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS00300 ridA 54801..55178 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  NMT99_RS00305 spoVG 55373..55666 (+) 294 WP_003218346.1 septation regulator SpoVG -
  NMT99_RS00310 glmU 55859..57229 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  NMT99_RS00315 prsS 57252..58205 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  NMT99_RS00320 rplYB 58290..58904 (+) 615 WP_029726391.1 50S ribosomal protein L25/general stress protein Ctc -
  NMT99_RS00325 pth 59011..59577 (+) 567 WP_029726390.1 aminoacyl-tRNA hydrolase -
  NMT99_RS00330 subA/fin 59637..59867 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  NMT99_RS00335 mfd 59937..63470 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  NMT99_RS00340 spoVT 63606..64142 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=609932 NMT99_RS00330 WP_003243417.1 59637..59867(+) (subA/fin) [Bacillus subtilis strain LjM2]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=609932 NMT99_RS00330 WP_003243417.1 59637..59867(+) (subA/fin) [Bacillus subtilis strain LjM2]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAGGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCACATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1