Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LDH50_RS20035 Genome accession   NZ_CP084168
Coordinates   4182144..4182740 (+) Length   198 a.a.
NCBI ID   WP_004893148.1    Uniprot ID   A0A483M0T8
Organism   Klebsiella pneumoniae strain B17602     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4177144..4187740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDH50_RS20015 (LDH50_20015) - 4177336..4179093 (-) 1758 WP_004147851.1 Lon protease family protein -
  LDH50_RS20020 (LDH50_20020) matP 4179279..4179731 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LDH50_RS20025 (LDH50_20025) ompA 4179863..4180933 (-) 1071 WP_002898408.1 porin OmpA -
  LDH50_RS20030 (LDH50_20030) sulA 4181286..4181795 (-) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  LDH50_RS20035 (LDH50_20035) sxy/tfoX 4182144..4182740 (+) 597 WP_004893148.1 TfoX/Sxy family DNA transformation protein Regulator
  LDH50_RS20040 (LDH50_20040) yccS 4182754..4184889 (-) 2136 WP_002898422.1 YccS family putative transporter -
  LDH50_RS20045 (LDH50_20045) - 4184907..4185353 (-) 447 WP_002898425.1 YccF domain-containing protein -
  LDH50_RS20050 (LDH50_20050) helD 4185478..4187532 (+) 2055 WP_004179218.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22562.12 Da        Isoelectric Point: 10.1298

>NTDB_id=609885 LDH50_RS20035 WP_004893148.1 4182144..4182740(+) (sxy/tfoX) [Klebsiella pneumoniae strain B17602]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIGGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=609885 LDH50_RS20035 WP_004893148.1 4182144..4182740(+) (sxy/tfoX) [Klebsiella pneumoniae strain B17602]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCAGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGGCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A483M0T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51