Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RBAU_RS11130 Genome accession   NC_022075
Coordinates   2305648..2306256 (+) Length   202 a.a.
NCBI ID   WP_007409489.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5033     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2300648..2311256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAU_RS11090 (RBAU_2177) - 2301701..2302207 (-) 507 WP_007409495.1 PTS glucose transporter subunit IIA -
  RBAU_RS11095 (RBAU_2178) - 2302346..2302759 (+) 414 WP_020954207.1 heat-shock protein -
  RBAU_RS11100 (RBAU_2179) - 2302789..2303223 (-) 435 WP_007409493.1 YppG family protein -
  RBAU_RS11105 (RBAU_2180) - 2303410..2303592 (+) 183 WP_003153532.1 YppF family protein -
  RBAU_RS11110 (RBAU_2181) - 2303631..2303999 (-) 369 WP_007409492.1 YppE family protein -
  RBAU_RS11115 (RBAU_2182) - 2304045..2304290 (-) 246 WP_007409491.1 DUF5446 family protein -
  RBAU_RS11120 (RBAU_2183) sspM 2304496..2304600 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  RBAU_RS11125 (RBAU_2184) - 2304644..2305606 (-) 963 WP_020954208.1 DUF2515 family protein -
  RBAU_RS11130 (RBAU_2185) recU 2305648..2306256 (+) 609 WP_007409489.1 Holliday junction resolvase RecU Machinery gene
  RBAU_RS11135 (RBAU_2186) - 2306295..2309078 (+) 2784 WP_007409488.1 PBP1A family penicillin-binding protein -
  RBAU_RS11140 (RBAU_2187) - 2309156..2309647 (-) 492 WP_007409487.1 YpoC family protein -
  RBAU_RS11145 (RBAU_2188) nth 2309644..2310303 (-) 660 WP_007409486.1 endonuclease III -
  RBAU_RS11150 (RBAU_2189) dnaD 2310322..2311020 (-) 699 WP_007409485.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.81 Da        Isoelectric Point: 9.5778

>NTDB_id=60984 RBAU_RS11130 WP_007409489.1 2305648..2306256(+) (recU) [Bacillus velezensis UCMB5033]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLVNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=60984 RBAU_RS11130 WP_007409489.1 2305648..2306256(+) (recU) [Bacillus velezensis UCMB5033]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGTTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment