Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NML18_RS08900 Genome accession   NZ_CP101269
Coordinates   1854562..1855989 (-) Length   475 a.a.
NCBI ID   WP_104725544.1    Uniprot ID   -
Organism   Escherichia coli strain EC21Z-048     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1849562..1860989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML18_RS08870 (NML18_08880) yeeZ 1849617..1850441 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  NML18_RS08875 (NML18_08885) yeeY 1850487..1851416 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NML18_RS08880 (NML18_08890) yoeI 1851631..1851693 (+) 63 WP_010723108.1 membrane protein YoeI -
  NML18_RS08885 (NML18_08895) plaP 1851683..1853041 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NML18_RS08890 (NML18_08900) tsuA 1853220..1854278 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  NML18_RS08895 (NML18_08905) tsuB 1854292..1854519 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NML18_RS08900 (NML18_08910) sbcB 1854562..1855989 (-) 1428 WP_104725544.1 exodeoxyribonuclease I Machinery gene
  NML18_RS08905 (NML18_08915) dacD 1856198..1857364 (+) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NML18_RS08910 (NML18_08920) sbmC 1857483..1857956 (+) 474 WP_001105410.1 DNA gyrase inhibitor SbmC -
  NML18_RS08915 (NML18_08925) yeeA 1858154..1859212 (+) 1059 WP_001200882.1 FUSC family protein -
  NML18_RS08920 (NML18_08930) tmaR 1859384..1859713 (+) 330 WP_000450409.1 DUF496 family protein -
  NML18_RS08925 (NML18_08935) - 1859814..1860110 (-) 297 Protein_1749 EutP/PduV family microcompartment system protein -
  NML18_RS08930 (NML18_08940) - 1860089..1860448 (+) 360 WP_009008093.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54449.72 Da        Isoelectric Point: 5.3514

>NTDB_id=609805 NML18_RS08900 WP_104725544.1 1854562..1855989(-) (sbcB) [Escherichia coli strain EC21Z-048]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEQRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=609805 NML18_RS08900 WP_104725544.1 1854562..1855989(-) (sbcB) [Escherichia coli strain EC21Z-048]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCAGCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581