Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   RBAU_RS07085 Genome accession   NC_022075
Coordinates   1402867..1403463 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5033     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1397867..1408463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAU_RS07055 (RBAU_1377) - 1398079..1398534 (+) 456 WP_007409622.1 flavodoxin -
  RBAU_RS07060 (RBAU_1378) dapD 1398616..1399326 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  RBAU_RS07065 (RBAU_1379) - 1399397..1400521 (+) 1125 WP_007409624.1 N-acetyldiaminopimelate deacetylase -
  RBAU_RS07070 (RBAU_1380) - 1400582..1400827 (+) 246 WP_003154596.1 YkuS family protein -
  RBAU_RS07075 (RBAU_1381) - 1400861..1401667 (-) 807 WP_007409625.1 mechanosensitive ion channel family protein -
  RBAU_RS07080 (RBAU_1382) - 1401956..1402414 (+) 459 WP_007409626.1 TlpA disulfide reductase family protein -
  RBAU_RS07085 (RBAU_1383) rok 1402867..1403463 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  RBAU_RS07090 (RBAU_1384) - 1403484..1404476 (-) 993 WP_007409627.1 hypothetical protein -
  RBAU_RS07095 (RBAU_1385) - 1404622..1405224 (+) 603 WP_007409628.1 molybdenum cofactor guanylyltransferase -
  RBAU_RS07100 (RBAU_1386) - 1405276..1406295 (+) 1020 WP_007409629.1 molybdopterin-synthase adenylyltransferase MoeB -
  RBAU_RS07105 (RBAU_1387) glp 1406313..1407605 (+) 1293 WP_007409630.1 gephyrin-like molybdotransferase Glp -
  RBAU_RS07110 (RBAU_1388) mobB 1407566..1408087 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=60977 RBAU_RS07085 WP_003154591.1 1402867..1403463(+) (rok) [Bacillus velezensis UCMB5033]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=60977 RBAU_RS07085 WP_003154591.1 1402867..1403463(+) (rok) [Bacillus velezensis UCMB5033]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment