Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   RBAU_RS06985 Genome accession   NC_022075
Coordinates   1386998..1387462 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis UCMB5033     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381998..1392462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAU_RS06970 (RBAU_1358) - 1382479..1384299 (+) 1821 WP_007409606.1 PAS domain-containing protein -
  RBAU_RS06975 (RBAU_1359) - 1384324..1385493 (-) 1170 WP_007409607.1 aminotransferase A -
  RBAU_RS21620 (RBAU_1360) - 1385694..1385855 (-) 162 WP_007409608.1 hypothetical protein -
  RBAU_RS06980 (RBAU_1362) cheV 1386044..1386955 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  RBAU_RS06985 (RBAU_1363) kre 1386998..1387462 (-) 465 WP_003154622.1 YkyB family protein Regulator
  RBAU_RS06990 (RBAU_1364) - 1387585..1388877 (-) 1293 WP_007409610.1 MFS transporter -
  RBAU_RS06995 (RBAU_1365) - 1388953..1389447 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  RBAU_RS07000 (RBAU_1366) - 1389522..1390385 (-) 864 WP_007409612.1 metallophosphoesterase -
  RBAU_RS07005 (RBAU_1367) fadH 1390530..1391294 (+) 765 WP_007409613.1 2,4-dienoyl-CoA reductase -
  RBAU_RS07010 (RBAU_1368) - 1391408..1391956 (+) 549 WP_007409614.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=60976 RBAU_RS06985 WP_003154622.1 1386998..1387462(-) (kre) [Bacillus velezensis UCMB5033]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=60976 RBAU_RS06985 WP_003154622.1 1386998..1387462(-) (kre) [Bacillus velezensis UCMB5033]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGTAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment