Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LCP48_RS21285 Genome accession   NZ_CP084108
Coordinates   4301928..4302878 (-) Length   316 a.a.
NCBI ID   WP_004231947.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain anQ-h6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4296928..4307878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCP48_RS21255 - 4296942..4297844 (-) 903 WP_004231956.1 polyprenyl synthetase family protein -
  LCP48_RS21260 - 4298183..4298728 (+) 546 WP_004231955.1 hypothetical protein -
  LCP48_RS21265 - 4298820..4299134 (-) 315 WP_225340500.1 antibiotic biosynthesis monooxygenase -
  LCP48_RS21270 - 4299136..4300161 (-) 1026 WP_004231952.1 siderophore ABC transporter substrate-binding protein -
  LCP48_RS21275 - 4300224..4300985 (-) 762 WP_004231950.1 ABC transporter ATP-binding protein -
  LCP48_RS21280 - 4300982..4301935 (-) 954 WP_004231949.1 iron chelate uptake ABC transporter family permease subunit -
  LCP48_RS21285 ceuB 4301928..4302878 (-) 951 WP_004231947.1 ABC transporter permease Machinery gene
  LCP48_RS21290 - 4303163..4304215 (-) 1053 WP_004231946.1 hypothetical protein -
  LCP48_RS21295 menC 4304266..4305372 (-) 1107 WP_004231944.1 o-succinylbenzoate synthase -
  LCP48_RS21300 - 4305394..4306218 (-) 825 WP_225340501.1 GNAT family N-acetyltransferase -
  LCP48_RS21305 - 4306218..4307363 (-) 1146 WP_004231941.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34796.00 Da        Isoelectric Point: 10.1980

>NTDB_id=609632 LCP48_RS21285 WP_004231947.1 4301928..4302878(-) (ceuB) [Lysinibacillus capsici strain anQ-h6]
MKIRYLLTATVVLSIVSLFIGVVDIKPSDLLDFQSEEARLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSVTTFFAYKANII
QNISAWLQGDFSLIMKGRYELLYVSVPILILAYIYANRFTVAGMGEDFAKNLGLSYKFVVNLGLVLVALISTTVVLTVGI
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLFCDILGRVLIFPYEIPISMTVGVIGSAIFLFMLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=609632 LCP48_RS21285 WP_004231947.1 4301928..4302878(-) (ceuB) [Lysinibacillus capsici strain anQ-h6]
ATGAAAATAAGATATCTTTTAACAGCAACTGTTGTGCTGTCTATTGTGTCGCTCTTTATCGGAGTAGTAGATATTAAGCC
TAGCGACCTATTAGACTTCCAATCAGAAGAAGCTAGACTATTTTTAATTAGTCGTGTACCTAGACTTGTTGCAATCTTGC
TGGCAGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGGAATAAATTCGTTTCACCCACAACAGCT
GGTACATTAGATGCCACACGGTTAGGTGTATTGATTTCCATGATGTTCTTTACGAACGTTACGTATTTCCAAAAAATTTC
CTTCGCTTTCATATTTGCTCTAGCCGGCACATTACTATTTATGCAAATATTAAACCGAATTAAGTTTAAAGATGCGATTT
TTATACCGCTTATTGGCTTAATGTTTGGGAATATTTTGTCCTCTGTTACAACATTCTTTGCCTATAAGGCGAATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATCATGAAAGGCCGTTACGAACTGTTATACGTTAGTGTACC
AATACTCATTTTAGCTTACATTTACGCAAATCGTTTTACAGTAGCCGGGATGGGAGAGGATTTTGCAAAAAATCTTGGTC
TATCGTATAAATTTGTAGTCAATTTAGGCTTGGTGTTGGTAGCTCTTATCTCCACGACAGTGGTGTTAACAGTCGGTATC
ATTCCATTCCTTGGTTTGATTATTCCGAACATTATTTCCCTGTTTAAAGGTGATAATTTGGCAAAAACCTTGCCGCACAC
AGCATTACTTGGTATGTCATTCTTATTATTCTGTGATATTTTAGGACGAGTACTGATTTTCCCTTATGAAATACCAATAA
GTATGACTGTTGGTGTAATTGGAAGTGCCATCTTCCTATTCATGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528