Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LCP48_RS14780 Genome accession   NZ_CP084108
Coordinates   2995838..2997529 (-) Length   563 a.a.
NCBI ID   WP_225340322.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain anQ-h6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2990838..3002529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCP48_RS14760 - 2991256..2992827 (-) 1572 WP_225340321.1 DUF342 domain-containing protein -
  LCP48_RS14765 - 2993106..2993285 (-) 180 WP_004231181.1 hypothetical protein -
  LCP48_RS14770 spo0A 2993593..2994384 (-) 792 WP_004231179.1 sporulation transcription factor Spo0A -
  LCP48_RS14775 - 2994769..2995716 (-) 948 WP_009370207.1 SpoIVB peptidase S55 domain-containing protein -
  LCP48_RS14780 recN 2995838..2997529 (-) 1692 WP_225340322.1 DNA repair protein RecN Machinery gene
  LCP48_RS14785 ahrC 2997563..2998012 (-) 450 WP_004231170.1 transcriptional regulator AhrC/ArgR -
  LCP48_RS14790 - 2998113..2998931 (-) 819 WP_004231167.1 TlyA family RNA methyltransferase -
  LCP48_RS14795 dxs 2998931..3000832 (-) 1902 WP_004231165.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LCP48_RS14800 - 3000996..3001877 (-) 882 WP_004231163.1 polyprenyl synthetase family protein -
  LCP48_RS14805 - 3001881..3002114 (-) 234 WP_004231161.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63485.29 Da        Isoelectric Point: 4.6214

>NTDB_id=609623 LCP48_RS14780 WP_225340322.1 2995838..2997529(-) (recN) [Lysinibacillus capsici strain anQ-h6]
MLRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSVHPVLKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KNYRAQYDEYRLLKKDLASISIDEQLMAQRIDLYQFQMKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALEDAATVDEQFKESSEAVTTAFYTLQDAAYQVKNVLDELEFDPARLNEVEQRLALLQTLKRKYGST
VEEILAYYEKIKNELNELLNRDEILQVKERRVLEMEAVLNELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=609623 LCP48_RS14780 WP_225340322.1 2995838..2997529(-) (recN) [Lysinibacillus capsici strain anQ-h6]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACTGTCAGCTTTTTAGAAGGCTTAACAGTTCT
CACTGGGGAAACAGGCGCCGGAAAATCCATTATCATTGATGCGGTGCATTTACTTGCAGGTGGACGAGGCAACACTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCAGTTCATCCTGTTCTGAAAAAG
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACAATTATTTTACGTCGAGATTTGAATGATACTGGTAAAAGTATTTG
CCGAGTGAATGGTAAGCTTGTGCCTTTATCGGTACTAAGAGACATTGGGGCAAGTCTCATTGATATTCATGGCCAACATG
AAAATCAAGAGCTAATGGATGAAAAGCAGCACATTAATTTGCTTGATCAGTTTGCAGAAGAAGAGCTGTCGCCGATTCAA
AAAAACTATCGTGCCCAATATGATGAATACCGTTTGCTCAAAAAAGACTTAGCTTCTATATCCATTGATGAGCAGTTGAT
GGCACAACGTATCGATTTGTATCAATTTCAAATGAAAGAGTTGGACGAAGCTAATTTAAAGTTAGGTGAGGAAGACGAGC
TTCTAGACGAACGCCGTCGTCTGATGAATTTTAATAAAATTTTTGAACGCTCTAGTGCAGCCTATGAAGCCATTCAGGGT
GAAACAAAAGGGCTTGATTGGATCGGGACGGCAATGGGTGCTTTAGAAGATGCTGCAACGGTTGATGAGCAATTCAAAGA
ATCATCTGAGGCAGTTACAACTGCGTTTTATACATTACAGGATGCAGCCTATCAGGTCAAAAATGTGTTAGATGAATTAG
AATTTGACCCTGCACGTTTAAACGAGGTTGAGCAGCGATTGGCGTTGTTGCAAACTTTAAAACGCAAATATGGTTCGACA
GTGGAAGAGATCTTGGCTTATTATGAAAAAATTAAAAACGAGTTAAATGAGCTGTTGAATCGTGATGAGATTTTGCAGGT
GAAAGAACGACGTGTGTTAGAGATGGAAGCTGTACTCAATGAGCTGGCTAGTGAACTTTCAACTGTACGTAAAGCTGCAG
CCCAACAATTGAGTGAAGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCCTATTTTGATGCCAATGGGAAAGATCAAATTATCTTCTACATTTCCACAAACGTTGGGGAGCCACCAAAGTC
TTTACCGAAAATTGCATCAGGTGGAGAATTATCACGAATGATGCTAGCGTTGAAAACCATTTTCTCTTCTTCCAATGGAA
TTACTTCCATTATATTTGATGAGGTGGATACAGGTGTCAGTGGTCGTGTTGCGCAAGCGATTGCAGAGAAAATTGCCGCA
ATTTCTGTTAATTCTCAAGTTTTATGTATTTCACATTTACCTCAAGTTGCAGCGATGGCTGATCATCATTACTTCATCAA
AAAAGAAGTCGAACATGATCGAACGTTTACTTCCTTATCAGAAATTGATCAAGATGCTCGTATAGAGGAAGTTAGCCGTA
TGATGTCTGGAACTGAAATTACAGCTTTGACACTACAGCATGCCACGGAGCTTTTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.34

100

0.536