Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   EL277_RS02955 Genome accession   NZ_AP018936
Coordinates   558291..558557 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NU83127     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553291..563557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL277_RS02935 (SPNU_0553) - 553534..554043 (+) 510 WP_000619941.1 GNAT family N-acetyltransferase -
  EL277_RS02940 (SPNU_0554) pheT 554120..556525 (+) 2406 WP_000961509.1 phenylalanine--tRNA ligase subunit beta -
  EL277_RS02945 (SPNU_0555) - 556593..557594 (-) 1002 WP_000597970.1 endonuclease/exonuclease/phosphatase family protein -
  EL277_RS02950 - 557750..558165 (+) 416 Protein_555 helix-turn-helix domain-containing protein -
  EL277_RS02955 (SPNU_0557) HI0659 558291..558557 (+) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene
  EL277_RS02960 (SPNU_0558) metE 558818..561067 (+) 2250 WP_000108201.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EL277_RS02965 (SPNU_0559) metF 561131..561997 (+) 867 WP_000089968.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=60962 EL277_RS02955 WP_001808618.1 558291..558557(+) (HI0659) [Streptococcus pneumoniae strain NU83127]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=60962 EL277_RS02955 WP_001808618.1 558291..558557(+) (HI0659) [Streptococcus pneumoniae strain NU83127]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534

Multiple sequence alignment