Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LB316_RS02925 Genome accession   NZ_CP084107
Coordinates   587824..588393 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 582824..593393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS02900 (LB316_02900) cysE 584037..584684 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  LB316_RS02905 (LB316_02905) cysS 584668..586068 (+) 1401 WP_029753826.1 cysteine--tRNA ligase -
  LB316_RS02910 (LB316_02910) - 586061..586465 (+) 405 WP_000370186.1 Mini-ribonuclease 3 -
  LB316_RS02915 (LB316_02915) rlmB 586473..587219 (+) 747 WP_000390331.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LB316_RS02920 (LB316_02920) - 587219..587743 (+) 525 WP_000664738.1 NYN domain-containing protein -
  LB316_RS02925 (LB316_02925) sigH 587824..588393 (+) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  LB316_RS02930 (LB316_02930) rpmG 588508..588651 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  LB316_RS02935 (LB316_02935) secE 588707..588889 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LB316_RS02940 (LB316_02940) nusG 588902..589450 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  LB316_RS02945 (LB316_02945) rplK 589631..590053 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  LB316_RS02950 (LB316_02950) rplA 590261..590953 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  LB316_RS02955 (LB316_02955) rplJ 591225..591725 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  LB316_RS02960 (LB316_02960) rplL 591768..592136 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LB316_RS02965 (LB316_02965) - 592311..592919 (+) 609 WP_000020299.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=609563 LB316_RS02925 WP_000872876.1 587824..588393(+) (sigH) [Staphylococcus aureus strain CC49/ST49-MSSA]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=609563 LB316_RS02925 WP_000872876.1 587824..588393(+) (sigH) [Staphylococcus aureus strain CC49/ST49-MSSA]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984