Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Dongsha4_RS18425 Genome accession   NZ_CP084098
Coordinates   4220021..4221319 (-) Length   432 a.a.
NCBI ID   WP_330203725.1    Uniprot ID   -
Organism   Cyanobacterium sp. Dongsha4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4215021..4226319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Dongsha4_RS18405 (Dongsha4_18380) trmH 4217879..4218556 (+) 678 WP_330203721.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  Dongsha4_RS18410 (Dongsha4_18385) - 4218529..4218834 (-) 306 WP_330203722.1 2Fe-2S iron-sulfur cluster-binding protein -
  Dongsha4_RS18415 (Dongsha4_18390) - 4218961..4219179 (-) 219 WP_330203723.1 DUF167 domain-containing protein -
  Dongsha4_RS18420 (Dongsha4_18395) - 4219213..4219932 (-) 720 WP_330203724.1 pentapeptide repeat-containing protein -
  Dongsha4_RS18425 (Dongsha4_18400) comA 4220021..4221319 (-) 1299 WP_330203725.1 phospholipase D-like domain-containing protein Machinery gene
  Dongsha4_RS18430 (Dongsha4_18405) - 4221340..4222020 (-) 681 WP_330203726.1 uracil-DNA glycosylase family protein -
  Dongsha4_RS18435 (Dongsha4_18410) purQ 4222125..4222805 (-) 681 WP_330203727.1 phosphoribosylformylglycinamidine synthase subunit PurQ -
  Dongsha4_RS18440 (Dongsha4_18415) purS 4222826..4223089 (-) 264 WP_015220033.1 phosphoribosylformylglycinamidine synthase subunit PurS -
  Dongsha4_RS18445 (Dongsha4_18420) - 4223253..4223888 (-) 636 WP_330203728.1 biopolymer transporter ExbD -
  Dongsha4_RS18450 (Dongsha4_18425) sodN 4224114..4224599 (+) 486 WP_330203729.1 superoxide dismutase, Ni -
  Dongsha4_RS18455 (Dongsha4_18430) sodX 4224705..4224980 (+) 276 WP_330203730.1 nickel-type superoxide dismutase maturation protease -
  Dongsha4_RS18460 (Dongsha4_18435) dnaJ 4225086..4226216 (+) 1131 WP_330203731.1 molecular chaperone DnaJ -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 48584.27 Da        Isoelectric Point: 7.3168

>NTDB_id=609533 Dongsha4_RS18425 WP_330203725.1 4220021..4221319(-) (comA) [Cyanobacterium sp. Dongsha4]
MLKIISFPLGLIFSLIVLGGCHNSPPKLPPLAQEESIQVYFNHNQAKGKEYEEPYRKIKRFGDDLETVLIEQINSANQTI
DIAIQELNLARLARVIVEKKKQGVKIRIVTENNYNKPLSQLPNNHGLAILKRANIPIIDDTEDGSKGSGLMHHKFVVIDQ
KKVVTGSANFTLSGIHGDFDNQETRGNTNHLIVFNSQEMAKIFTQEFNYLWGDGVGKKKDSLFGLNKPERRTNIVNIGSS
SIVVKFSPNSRSTLWENSSNGIIARELAKANSSIDLALFVFSDQEIANTLEKESLAGVKIRVLIDPNFAYQYYSEGLDLL
GVALSRKCVYENNNNPWRQPLETVGIPRLPLGDKLHHKFAIVDRYIVITGSHNWSNSANNINDETLLVIYNPLIAQHFQR
EFDYLYHDAILGVSSELKKEIDQENSKCGLSN

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=609533 Dongsha4_RS18425 WP_330203725.1 4220021..4221319(-) (comA) [Cyanobacterium sp. Dongsha4]
ATGCTTAAAATAATTAGTTTTCCCCTAGGTCTAATTTTTAGCTTAATAGTATTGGGTGGTTGTCATAATTCTCCACCTAA
ATTGCCACCTTTAGCTCAAGAGGAAAGCATCCAAGTTTATTTTAATCATAATCAAGCGAAGGGAAAAGAATATGAAGAAC
CTTATCGTAAAATTAAAAGATTTGGAGATGATTTAGAAACAGTTTTAATTGAGCAAATTAATAGTGCAAATCAAACTATT
GATATAGCGATTCAAGAATTAAATTTGGCAAGATTAGCAAGGGTGATTGTAGAGAAAAAAAAGCAGGGTGTAAAAATAAG
AATTGTCACGGAAAATAATTATAATAAACCTTTAAGTCAGTTGCCGAATAATCATGGTTTAGCAATTCTAAAAAGGGCGA
ATATACCCATCATCGATGATACAGAAGATGGCAGTAAGGGCAGTGGTTTAATGCACCATAAATTTGTTGTTATTGATCAA
AAAAAAGTTGTTACAGGTTCAGCAAATTTCACTCTGAGTGGTATTCATGGAGATTTTGATAATCAAGAAACAAGGGGAAA
TACAAATCATTTAATTGTATTTAATAGTCAAGAAATGGCTAAAATTTTTACTCAAGAATTTAACTACTTATGGGGTGATG
GAGTAGGAAAAAAGAAGGATAGCTTATTTGGTTTAAATAAACCCGAAAGACGCACAAACATAGTAAATATTGGCAGTAGT
TCTATTGTGGTAAAATTTTCTCCTAATAGTCGATCAACTCTTTGGGAGAATAGTAGTAATGGTATTATTGCTAGGGAATT
AGCAAAGGCGAATAGTTCTATTGATTTAGCATTATTTGTTTTTAGTGATCAAGAAATAGCAAATACTCTTGAAAAAGAAT
CCTTAGCAGGAGTAAAAATAAGGGTTTTAATTGATCCTAATTTTGCTTACCAATACTATAGTGAAGGACTTGATTTGTTG
GGGGTTGCCCTTTCAAGAAAATGTGTTTATGAGAATAATAATAATCCTTGGCGACAACCATTAGAAACTGTCGGCATTCC
TCGTTTACCGTTGGGAGATAAGTTACATCATAAATTTGCTATAGTTGACCGTTATATCGTAATCACAGGCTCTCATAACT
GGTCTAATTCTGCAAATAATATTAACGATGAAACCTTATTAGTTATTTATAATCCTCTTATTGCTCAACATTTTCAGAGG
GAATTTGACTATCTTTATCACGATGCAATATTAGGAGTTTCTTCGGAGTTAAAAAAAGAAATTGACCAAGAAAATTCCAA
ATGTGGGCTATCGAATTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(69-211)

PLD-like domain (PLDc_2)

(264-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

47.732

100

0.512