Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Dongsha4_RS17360 Genome accession   NZ_CP084098
Coordinates   3987742..3988116 (-) Length   124 a.a.
NCBI ID   WP_041922412.1    Uniprot ID   A0A844GN83
Organism   Cyanobacterium sp. Dongsha4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3982742..3993116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Dongsha4_RS17350 (Dongsha4_17315) purL 3983663..3985942 (-) 2280 WP_330203540.1 phosphoribosylformylglycinamidine synthase subunit PurL -
  Dongsha4_RS17355 (Dongsha4_17320) trmFO 3986125..3987474 (-) 1350 WP_330203541.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Dongsha4_RS17360 (Dongsha4_17325) pilH 3987742..3988116 (-) 375 WP_041922412.1 response regulator Machinery gene
  Dongsha4_RS17365 (Dongsha4_17330) thiL 3988228..3989217 (-) 990 WP_330203542.1 thiamine-phosphate kinase -
  Dongsha4_RS17370 (Dongsha4_17335) - 3989421..3989948 (-) 528 WP_330203543.1 tetratricopeptide repeat protein -
  Dongsha4_RS17375 (Dongsha4_17345) - 3990413..3990841 (+) 429 WP_330203544.1 single-stranded DNA-binding protein -
  Dongsha4_RS17380 (Dongsha4_17350) - 3990885..3991070 (-) 186 Protein_3423 four helix bundle protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14118.50 Da        Isoelectric Point: 6.7140

>NTDB_id=609531 Dongsha4_RS17360 WP_041922412.1 3987742..3988116(-) (pilH) [Cyanobacterium sp. Dongsha4]
MIKILVVDDNHTPREVISEALKQFNIQVTEASNGVEATKIIEKEKFNLVITDVVMPEMNGYELCRWIKSNPGTEKVPVII
CSTKGEEFDIHWATKQGADAYIIKPFKTMELLKTIKYLLKHNVG

Nucleotide


Download         Length: 375 bp        

>NTDB_id=609531 Dongsha4_RS17360 WP_041922412.1 3987742..3988116(-) (pilH) [Cyanobacterium sp. Dongsha4]
ATGATTAAAATTTTAGTAGTCGATGATAATCACACACCCAGAGAAGTGATCAGCGAAGCACTGAAACAATTTAATATTCA
AGTAACCGAAGCATCCAATGGGGTAGAGGCAACCAAAATCATTGAGAAAGAAAAATTCAACCTCGTAATTACTGATGTAG
TTATGCCTGAAATGAATGGCTATGAATTATGTCGTTGGATAAAGAGTAATCCCGGAACAGAAAAAGTCCCTGTAATCATT
TGCTCTACAAAAGGAGAAGAATTTGATATTCACTGGGCAACCAAACAAGGGGCTGATGCTTATATTATCAAGCCTTTTAA
AACGATGGAACTATTAAAAACCATCAAATATTTACTCAAGCATAATGTAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A844GN83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

55.372

97.581

0.54