Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Dongsha4_RS09965 Genome accession   NZ_CP084098
Coordinates   2292680..2294212 (-) Length   510 a.a.
NCBI ID   WP_330202255.1    Uniprot ID   -
Organism   Cyanobacterium sp. Dongsha4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2287680..2299212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Dongsha4_RS09955 (Dongsha4_09975) argS 2289621..2291369 (+) 1749 WP_330202253.1 arginine--tRNA ligase -
  Dongsha4_RS09960 (Dongsha4_09980) - 2291737..2292288 (-) 552 WP_330202254.1 phosphatase PAP2 family protein -
  Dongsha4_RS09965 (Dongsha4_09985) radA 2292680..2294212 (-) 1533 WP_330202255.1 DNA repair protein RadA Machinery gene
  Dongsha4_RS09970 (Dongsha4_09990) - 2294463..2294864 (-) 402 WP_330202256.1 pre-16S rRNA-processing nuclease YqgF -
  Dongsha4_RS09975 (Dongsha4_09995) - 2294989..2295699 (+) 711 WP_330202257.1 hypothetical protein -
  Dongsha4_RS09980 (Dongsha4_10000) - 2295820..2296875 (+) 1056 WP_330202258.1 AI-2E family transporter -
  Dongsha4_RS09985 (Dongsha4_10005) - 2297003..2298523 (+) 1521 WP_330202259.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55312.75 Da        Isoelectric Point: 5.0055

>NTDB_id=609525 Dongsha4_RS09965 WP_330202255.1 2292680..2294212(-) (radA) [Cyanobacterium sp. Dongsha4]
MAKTRTVYICNSCGAESSQWFGKCPSCDTYGSLEEVILNGNGNFSRGGWQSNARPHQKNVTPAQPRISVKFSDIKEEEQP
RMNSGYQELDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQTANQLAIRFPRILYVSAEESGQQVKLRASRLGVGVIEEDEE
ELDHNHNGNGHKTNQINQDYSEPNLYVLAETDLEEILRELESLKPQVAIIDSIQTLHFATLNSAPGSVSQVRECTSALMQ
VAKREGITLFIVGHVTKEGAIAGPRVLEHLVDTVLYFEGDRYASHRLLRSVKNRFGATHEIGIFEMVDHGLDEVSNPSEL
FLSSRDELAPGTATIVSCEGTRCIVVELQALVSPTSYTSPRRSTTGVDYNRLQQILAVLEKRVGIPLSKLDAYVASAGGL
GVEEPAADLGMAIAIVASFRDRTVDPRTVLIGEIGLGGQVRLVSQMELRLKEAAKLGFKRAIVPKGQTYPSDLGLEILCV
GKVIDAIVLAIPNQSPSSVDINADSIVEDE

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=609525 Dongsha4_RS09965 WP_330202255.1 2292680..2294212(-) (radA) [Cyanobacterium sp. Dongsha4]
ATGGCAAAAACCAGAACTGTTTATATCTGTAACTCTTGCGGTGCAGAATCTTCTCAGTGGTTTGGAAAATGTCCTAGTTG
CGATACTTACGGTTCTTTGGAAGAAGTCATCCTTAATGGTAATGGAAACTTTAGTCGAGGTGGTTGGCAGTCGAATGCCC
GTCCTCACCAAAAAAATGTTACCCCTGCACAACCGAGAATTTCTGTCAAGTTTTCCGATATAAAAGAAGAAGAGCAGCCT
CGCATGAATTCTGGCTATCAAGAACTCGATCGAGTCTTAGGGGGAGGAATCGTTCCGGGTTCTTTAGTGCTAATTGGGGG
AGATCCCGGTATTGGCAAATCAACTTTATTGTTACAAACTGCTAATCAATTGGCGATACGTTTTCCTCGCATTCTTTACG
TTTCGGCTGAGGAATCAGGACAACAGGTAAAATTAAGGGCTTCTCGTTTAGGGGTAGGGGTGATAGAAGAAGATGAGGAG
GAACTTGATCACAATCATAATGGCAATGGACACAAAACCAATCAGATTAATCAAGACTATAGTGAGCCGAATCTCTACGT
TTTAGCTGAAACAGATTTAGAAGAAATTTTAAGGGAATTAGAGTCTCTTAAGCCTCAAGTTGCTATTATTGACAGTATTC
AAACTCTTCATTTTGCCACTCTCAACTCTGCCCCCGGCTCTGTCTCTCAAGTAAGAGAATGTACTTCTGCCTTAATGCAG
GTTGCAAAGAGAGAGGGAATTACTTTATTTATTGTCGGTCATGTAACTAAAGAAGGTGCGATCGCAGGTCCTAGAGTTTT
AGAGCATTTAGTGGACACTGTACTATATTTTGAGGGCGATCGCTATGCCTCCCATCGTTTATTAAGATCTGTGAAGAATC
GTTTTGGGGCAACCCATGAAATCGGTATTTTTGAGATGGTGGATCATGGTTTAGACGAAGTGTCTAACCCTTCTGAGTTG
TTTTTAAGCAGTAGAGATGAATTAGCCCCCGGTACGGCTACAATCGTTTCCTGTGAGGGGACAAGATGTATAGTGGTCGA
GTTACAAGCCTTAGTAAGTCCCACCAGTTATACTTCTCCCCGTCGTTCTACCACAGGGGTTGACTATAATCGACTGCAAC
AGATTTTAGCGGTTTTAGAAAAACGAGTGGGAATTCCCCTCTCAAAATTAGATGCTTATGTTGCATCCGCAGGGGGATTA
GGAGTAGAAGAACCGGCCGCCGATTTAGGTATGGCTATTGCCATTGTGGCGAGTTTTCGCGATCGCACCGTTGATCCTCG
TACGGTTTTAATTGGGGAAATCGGTTTAGGAGGACAAGTGCGCCTAGTCTCGCAAATGGAGTTAAGGCTTAAAGAAGCGG
CTAAACTTGGTTTTAAAAGAGCGATCGTTCCTAAAGGTCAAACTTACCCCAGTGATTTAGGTTTAGAGATTCTCTGTGTC
GGAAAAGTCATAGATGCGATCGTTTTAGCAATTCCTAATCAATCTCCCTCCTCTGTGGATATAAATGCAGATTCTATTGT
TGAAGATGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(403-465)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(84-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.797

96.471

0.48
  radA Streptococcus pneumoniae Rx1

45.53

94.314

0.429
  radA Streptococcus pneumoniae D39

45.53

94.314

0.429
  radA Streptococcus pneumoniae R6

45.53

94.314

0.429
  radA Streptococcus pneumoniae TIGR4

45.53

94.314

0.429
  radA Streptococcus mitis SK321

45.322

94.314

0.427
  radA Streptococcus mitis NCTC 12261

45.702

93.529

0.427