Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LCF29_RS11155 Genome accession   NZ_CP084096
Coordinates   2355648..2356277 (+) Length   209 a.a.
NCBI ID   WP_225343777.1    Uniprot ID   -
Organism   Escherichia coli O78 strain 3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2350648..2361277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF29_RS11135 (LCF29_11135) ycbZ 2351034..2352794 (-) 1761 WP_000156510.1 AAA family ATPase -
  LCF29_RS11140 (LCF29_11140) matP 2352980..2353432 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LCF29_RS11145 (LCF29_11145) ompA 2353508..2354563 (-) 1056 WP_000750414.1 porin OmpA -
  LCF29_RS11150 (LCF29_11150) sulA 2354920..2355429 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  LCF29_RS11155 (LCF29_11155) sxy/tfoX 2355648..2356277 (+) 630 WP_225343777.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LCF29_RS11160 (LCF29_11160) yccS 2356240..2358402 (-) 2163 WP_000323868.1 YccS family putative transporter -
  LCF29_RS11165 (LCF29_11165) yccF 2358412..2358858 (-) 447 WP_001261235.1 YccF domain-containing protein -
  LCF29_RS11170 (LCF29_11170) helD 2358981..2361035 (+) 2055 WP_225343793.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24246.15 Da        Isoelectric Point: 9.4079

>NTDB_id=609496 LCF29_RS11155 WP_225343777.1 2355648..2356277(+) (sxy/tfoX) [Escherichia coli O78 strain 3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILREVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=609496 LCF29_RS11155 WP_225343777.1 2355648..2356277(+) (sxy/tfoX) [Escherichia coli O78 strain 3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCA
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995